Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_M01
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    30   0.43 
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.4  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    26   7.1  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    25   9.4  

>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = -2

Query: 315 SCFPSLVEFVMSRFDRSTWALITIASSV*NAPSFEENP*SVSG 187
           S FPSL +  ++ + + TW L  IAS+  +  S+ +NP  VSG
Sbjct: 410 SAFPSLAKNPVNPYSKDTWNLNVIASTNGSLLSYIDNP--VSG 450


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 484 RVVMSHHPTIPARKVGNFKQWITIPETFACTL 389
           R V S  P+IP+    N + W TIP+ + C L
Sbjct: 173 RDVSSEKPSIPSISFINIRSWRTIPKKW-CVL 203


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = -3

Query: 467 SPNHPSQKGRQL*TVDNNPGNFCMYPSCPLSIHIPRRKRPRLIAV*LAIAEVVFRLWLNS 288
           SP HP Q    L +  +N   F M P+  +  H+P     + I   L++  V+   W++S
Sbjct: 597 SPTHPQQA---LKSSSSNDFYFLMKPNECIFTHVPENPDQQFIMPDLSMPIVMALPWVSS 653

Query: 287 LCHVL 273
           +   L
Sbjct: 654 VYFTL 658


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 327 CNSRSCF--PSLVEFVMSRFDRSTWALITIASS 235
           C SR+ F  P+L+  ++    +STW  + + SS
Sbjct: 171 CKSRAIFTDPNLIPKLLGPLKQSTWVKLIVCSS 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,160,240
Number of Sequences: 5004
Number of extensions: 67173
Number of successful extensions: 213
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)