Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_M01
         (790 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)              29   5.7  
SB_54281| Best HMM Match : KAP_NTPase (HMM E-Value=0.46)               28   7.5  
SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)                  28   9.9  

>SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)
          Length = 434

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +1

Query: 616 CLRRSCFCIDGSVAF*RYXRGSSDTGPMAAHTSASTYPPA*PHSANPSTCNGY--HXTTT 789
           C RR CFCI        +   +S T P   H S +      PH A+ ST + Y  H +TT
Sbjct: 6   CFRRHCFCI--------FVTHASTTHPYITHASTTH-----PHIAHASTTHPYITHASTT 52


>SB_54281| Best HMM Match : KAP_NTPase (HMM E-Value=0.46)
          Length = 911

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +2

Query: 332 RQQSDEGAFGEECVSTMGKKGTCKSFR-DCYPLFKVADLSGWDGWVMGH 475
           + QS EG   + C ST   +     F   C P+  V +L G  G  +GH
Sbjct: 466 KSQSGEGTVQKVCASTGPPRALVAYFAMPCRPMSSVLNLRGGGGDFLGH 514


>SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)
          Length = 429

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = +2

Query: 371 VSTMGKKGTCKSFRDCYPLFKVADLSGWDGWVMGHYDTCSYISADNMEVFGVCCTEPVVT 550
           VS   + GTC S  D    +K  D+     W +G + +CS        +  V C+     
Sbjct: 78  VSCKPRDGTCNS-EDKPDAYKECDVMECPTWSVGQWSSCSVTCGVGRRLRSVVCSIHGKC 136

Query: 551 PPQQEP 568
             Q++P
Sbjct: 137 DKQRQP 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,218,489
Number of Sequences: 59808
Number of extensions: 551899
Number of successful extensions: 1272
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)