Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_M01
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70682-9|CAA94587.2|  460|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z70680-9|CAA94576.2|  460|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z50044-6|CAA90358.1|  223|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>Z70682-9|CAA94587.2|  460|Caenorhabditis elegans Hypothetical
           protein C25G4.1 protein.
          Length = 460

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -3

Query: 632 HDLRRQVSEVVDPAIILIFAHPVLAEEG*QPALYSRH--QKPPCCLR 498
           H+L +  S ++ P++ L+FA  VLA +   P   S H  +K  CC +
Sbjct: 267 HNLFKIFSNMLFPSLFLVFASAVLASDDLNPCNSSWHFFKKTGCCYK 313


>Z70680-9|CAA94576.2|  460|Caenorhabditis elegans Hypothetical
           protein C25G4.1 protein.
          Length = 460

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -3

Query: 632 HDLRRQVSEVVDPAIILIFAHPVLAEEG*QPALYSRH--QKPPCCLR 498
           H+L +  S ++ P++ L+FA  VLA +   P   S H  +K  CC +
Sbjct: 267 HNLFKIFSNMLFPSLFLVFASAVLASDDLNPCNSSWHFFKKTGCCYK 313


>Z50044-6|CAA90358.1|  223|Caenorhabditis elegans Hypothetical
           protein F22B5.6 protein.
          Length = 223

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 416 NP-GNFCMYPSCPLSIHIPRRKRPRLIAV*LAIAEVVFRLWLNSLCHVL 273
           NP G F    SC LS  I ++KRP      L +  V    WL +  H++
Sbjct: 3   NPYGTFAYVNSCCLSTWISQKKRPSYFLEALILPTVPESWWLLAQYHII 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,007,807
Number of Sequences: 27780
Number of extensions: 396492
Number of successful extensions: 1071
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)