Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_L23
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha...    27   2.3  
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz...    27   2.3  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    25   6.9  

>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
           Isp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +2

Query: 302 LEALADARIKYDDIQQAVCGYVFGDSTCGQRVLYQVGMTGIPIYNV 439
           L  ++   +KYDDI +    YV+ DS+ G  +   V  TG+ I++V
Sbjct: 189 LARISHKSVKYDDIGK----YVY-DSSAGDNITAYVVDTGVSIHHV 229


>SPBC1A4.06c |||mitochondrial matrix protein import
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +2

Query: 77  EILSLSCRISNSRSRLYHQRINSDSEFRLACRLP*GIVIIIITMP 211
           E+L       NSR   +HQ I  DS  RL   LP  +V I+   P
Sbjct: 279 EVLKSMDPSDNSRYLSFHQNITKDSISRLLNGLPLNLVKILGLKP 323


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 275  YPDFGKEAVLEALADARIKYDDIQ 346
            Y DFG    +    D  ++Y+DIQ
Sbjct: 1177 YSDFGSALYVSPPTDPEVRYEDIQ 1200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,992,530
Number of Sequences: 5004
Number of extensions: 37679
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)