Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_L23
         (526 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_21938| Best HMM Match : Big_2 (HMM E-Value=0.69)                    29   3.1  
SB_22274| Best HMM Match : Pentapeptide (HMM E-Value=5.4)              28   4.1  
SB_31511| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_17748| Best HMM Match : DUF1312 (HMM E-Value=0.0024)                27   7.2  
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_21510| Best HMM Match : zf-C2H2 (HMM E-Value=6.3e-07)               27   9.5  

>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +3

Query: 423  FPSTML-ITTAPQAQMHCFYRNSLLKEACVMXH 518
            FP T   I   P+    CFY N +L  +CV  H
Sbjct: 4222 FPGTEFPIWYGPECLRQCFYGNKMLPSSCVCHH 4254


>SB_21938| Best HMM Match : Big_2 (HMM E-Value=0.69)
          Length = 651

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 213 EKCTSLASG*RTSSSPLPEVTIPTSARKRC 302
           +K T L S  R+S+ P+P +T P  A  RC
Sbjct: 478 QKATVLISYKRSSAMPVPMITCPNPADPRC 507


>SB_22274| Best HMM Match : Pentapeptide (HMM E-Value=5.4)
          Length = 139

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/66 (22%), Positives = 31/66 (46%)
 Frame = -1

Query: 436 IVDGNTGHSDLIQHALSAGRVTEHIAADRLLNVVVFNTSVSQGL*HRFLAEVGIVTSGRG 257
           +++G      +++  +  GRV E +  +  +   V   +V +G+    +   G+V  GR 
Sbjct: 20  VMEGGVMEGTVMEGVVMEGRVMEGMVMEGTVEGGVMEGTVMEGVVMEGVVMEGVVMEGRI 79

Query: 256 LDEVRH 239
            DE+ H
Sbjct: 80  KDELNH 85


>SB_31511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 372

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = +2

Query: 293 EAVLEALADARIKYDDIQQAVCGYVFGDSTCGQRVLYQVGMTG--IPIYNVNNNCSTGSN 466
           EAV +AL+D  +      +AV  +  G ++ G R + +  + G  IP++ V  NC++ S 
Sbjct: 100 EAVAKALSDEHV------EAVYLFTEGSASDGSREMLRRKVEGSDIPVHVVAFNCNSPST 153

Query: 467 ALFLSKQLIEGG 502
             FL +   E G
Sbjct: 154 VKFLREICHETG 165


>SB_17748| Best HMM Match : DUF1312 (HMM E-Value=0.0024)
          Length = 1272

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 185  IVIIIITMPRKVYVVGVGMTNFVKPSTGGDYPDFGKEAVL 304
            ++I +I M   + +   G + F  PST GD  D G + ++
Sbjct: 908  VIITVIIMMIGIILAMCGASTFDTPSTRGDLSDLGGKVLM 947


>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = +3

Query: 264 PEVTIP---TSARKRC*RPWLTLVLNTTTFNRRSAAMCSVTRPADSACCIRSE*PVFPST 434
           PE T+    T+A +      +T    TTT +  + A  + T P  +   + +  P   + 
Sbjct: 497 PEATLAPEATTAPEAATASLVTTAPETTTASLATTAPETTTAPETTTASLATTAPETTTA 556

Query: 435 MLITTAPQA 461
            L+TTAP+A
Sbjct: 557 SLVTTAPEA 565


>SB_21510| Best HMM Match : zf-C2H2 (HMM E-Value=6.3e-07)
          Length = 229

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 448 VVINIVDGNTGHSDLIQHALSAGRVTEHIAADRLLNVVVFNTSV 317
           VV+N +DG     D+  H L   R+   ++    L ++V N S+
Sbjct: 124 VVVNALDGLKTSQDIFVHILGKSRINV-LSVPNALQILVVNKSI 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,343,223
Number of Sequences: 59808
Number of extensions: 293244
Number of successful extensions: 663
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)