Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_L16
(414 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces... 81 9e-17
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 27 0.87
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 27 1.5
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 26 2.0
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra... 25 4.7
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 25 6.1
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 25 6.1
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 24 8.1
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 24 8.1
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 24 8.1
>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 61
Score = 80.6 bits (190), Expect = 9e-17
Identities = 34/56 (60%), Positives = 44/56 (78%)
Frame = +1
Query: 91 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQ 258
MAKSKNHTNHNQN+KAHRNGIK+P+K R++S D KF RNQ+F +G ++ +Q
Sbjct: 1 MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFANRGTVEAIRQ 56
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 27.5 bits (58), Expect = 0.87
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 20 HVKSVTVRSSVLSSESKWIENASKWQSQRIIQIITKTAKLTEMVSKS 160
H +SV+ S L S + EN++K + Q+ T TEMVS +
Sbjct: 124 HKESVSKLSKNLESRNNRDENSAKREKNNSHQVEADTNNATEMVSSN 170
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 26.6 bits (56), Expect = 1.5
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 PMN*HVKS--VTVRSSVLSSESKWIENASKWQSQRIIQIITKTAKLTEMVSKSQGRPGTN 181
P + HV++ VT + + K+ E+ S+ ++I TK KLT K++ R
Sbjct: 975 PEHWHVEAGKVTGKGKTAVDDGKF-EDLSEKDLKKIEAKATKKKKLTRNEIKAKERRARE 1033
Query: 182 PPLAWIQN 205
LAW+Q+
Sbjct: 1034 RELAWLQS 1041
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 26.2 bits (55), Expect = 2.0
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +2
Query: 14 N*HVKSVTVRSSVLSSESKWIENASKWQSQRIIQIIT 124
N VK+VT + ++++ KW W+S++ +Q ++
Sbjct: 1220 NPDVKAVTNANIIITTPEKWDGITRSWKSRKYVQDVS 1256
>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 369
Score = 25.0 bits (52), Expect = 4.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 91 MAKSKNHTNHNQNRKAHRNGIKKPRK 168
+AK + NHN ++ A + I +PRK
Sbjct: 340 LAKRDDRKNHNHSKPATQANILQPRK 365
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 24.6 bits (51), Expect = 6.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 122 TKTAKLTEMVSKSQGRPGTN 181
T A +T++VSK G PG N
Sbjct: 220 TNPADITDLVSKYAGPPGNN 239
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 24.6 bits (51), Expect = 6.1
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +2
Query: 2 GRPMN*HVKSVTVRSSVLSSESKWIENASKWQSQRIIQIITKTAKLTEMVSKS 160
GR +N +SVT+ ++SK I + + QRI++ + L + VS++
Sbjct: 200 GRELNIPERSVTIWFQNRRAKSKLISRRQEEERQRILREQRELDSLNQKVSQA 252
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 24.2 bits (50), Expect = 8.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 109 HTNHNQNRKAHRNGIKKPRKTRHES 183
HTN +NR+ + G K R R E+
Sbjct: 887 HTNPQENRRRDKGGSVKRRNERTEN 911
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 24.2 bits (50), Expect = 8.1
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 23 VKSVTVRSSVLSSESKWIENASKWQSQRIIQ 115
+K + V + + S+W + +W+S R IQ
Sbjct: 1454 LKLIQVADLIFCTPSQWDSLSKRWRSMRSIQ 1484
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 24.2 bits (50), Expect = 8.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 226 KTFDSLKILDPCQGWIRAWSSLAF*YHFC 140
K SL +LD + AW+SL Y+ C
Sbjct: 518 KDLQSLNVLDISLKGVNAWNSLETSYYNC 546
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,380,162
Number of Sequences: 5004
Number of extensions: 25577
Number of successful extensions: 73
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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