Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_L15
(466 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 146 2e-36
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 140 1e-34
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 28 0.81
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 26 2.5
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 26 3.3
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 25 4.3
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 25 4.3
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 5.7
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 5.7
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 5.7
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 25 7.5
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 25 7.5
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 25 7.5
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 146 bits (353), Expect = 2e-36
Identities = 63/130 (48%), Positives = 90/130 (69%), Gaps = 2/130 (1%)
Frame = +3
Query: 3 PGQVVLVLSGRYAGRKAIVVKXYXEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRS 182
PG+V L+ GR+AG+K ++++ +G+ P+GHA VAG++RYP KV K MG +I +RS
Sbjct: 7 PGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIARRS 66
Query: 183 KIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEERYKSGK 356
++KPF+KVVNYNHLMPTRY ++ K +A K+P +R R + FEE+Y+SGK
Sbjct: 67 RVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEEKYQSGK 126
Query: 357 NKWFFQKLRF 386
+ WFF LRF
Sbjct: 127 SAWFFTPLRF 136
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 140 bits (339), Expect = 1e-34
Identities = 60/130 (46%), Positives = 89/130 (68%), Gaps = 2/130 (1%)
Frame = +3
Query: 3 PGQVVLVLSGRYAGRKAIVVKXYXEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRS 182
PG+V LV GR+AG+K ++++ +G+ P+GHA VAG++RYP KV K MG +I KRS
Sbjct: 7 PGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIAKRS 66
Query: 183 KIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEERYKSGK 356
++KPF+KV+NYNHLMPTRY ++ K + +P++R + + FEE+Y++GK
Sbjct: 67 RVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEEKYQTGK 126
Query: 357 NKWFFQKLRF 386
+ WFF LRF
Sbjct: 127 SAWFFTPLRF 136
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 27.9 bits (59), Expect = 0.81
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 156 GKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDF-SFEKFSAKDLKDP 290
G + I R K P K+VNYNH + + +F K D+ DP
Sbjct: 28 GNHWIFARFKFYPLNKIVNYNHFHSSSCQSEAKNFYKQFEGDISDP 73
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 26.2 bits (55), Expect = 2.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 6 GQVVLVLSGRYAGRKAIVV 62
G+VVLV G Y G+ A++V
Sbjct: 11 GRVVLVTKGEYTGKLAVIV 29
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 25.8 bits (54), Expect = 3.3
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = +3
Query: 3 PGQVVLVLSGRYAGRKAIVV 62
PG V ++L+GR+ G++ +V+
Sbjct: 54 PGTVCILLAGRFRGKRVVVL 73
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.4 bits (53), Expect = 4.3
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +3
Query: 249 FSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 383
+SF F D K+ K K R E Y +N+W F + R
Sbjct: 284 YSFFAFMYVDEKEWEKLKSFNVPLSERIVECYLDDENRWRFLRFR 328
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.4 bits (53), Expect = 4.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 287 VFQVFCAEFFKAEVNCITCWHQVIIVYNLDERLY 186
V+QVFC F A+ I +Q++ V NL E Y
Sbjct: 315 VYQVFCTNFPNAQQLIIDNQNQLLKVANLLEPSY 348
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.0 bits (52), Expect = 5.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 138 KVHKRMGKNKIHKRSKIKPFVKVV 209
K+ KR+G I SK+ P VK+V
Sbjct: 205 KIAKRIGFTDISLSSKLTPMVKIV 228
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.0 bits (52), Expect = 5.7
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 243 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 359
+ F K L DP+ R+K F ++ + +Y+ KN
Sbjct: 150 LQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 5.7
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 243 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEER 341
VD++ E+F DP+ + NT ++ E+R
Sbjct: 821 VDYAIERFCQFTALDPSSVPGTQLNTAIKVEDR 853
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 24.6 bits (51), Expect = 7.5
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -3
Query: 260 FKAEVNCITCWHQVIIVYNLDERLYLGPLVDFILSH 153
F V I C H V + + ++ GP ++F++ H
Sbjct: 90 FDNRVGVIECIHLVNFMCHDSLKINFGPRINFVIGH 125
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 24.6 bits (51), Expect = 7.5
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = -3
Query: 341 PLFKTYSRVETQLLTFSRVFQVFCAEFFKAEVNCITCWHQVIIVYNLDERLYLGPLVDFI 162
P+++ + + T S + CA+F E N + WH YNL R Y + D +
Sbjct: 749 PVYEDWHLLIFNASTSSMMKTWLCAKFSLKETNKTSFWHS---SYNLFNRQYHVDMPDNV 805
Query: 161 LSHP 150
P
Sbjct: 806 SDLP 809
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 24.6 bits (51), Expect = 7.5
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +3
Query: 186 IKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNTR 323
+ PF K Y H + T + S KF + K K R +TR
Sbjct: 39 VSPFFKKERYKHHLETNVSSHQSATKFIEPEPSPTKKTKLTRRDTR 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,531,685
Number of Sequences: 5004
Number of extensions: 29420
Number of successful extensions: 96
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -