Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_L12
         (743 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    26   0.37 
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    25   0.64 
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    24   1.5  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    22   4.5  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    22   4.5  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    22   4.5  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    21   7.9  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 256 NRNCKYNLNHGQKRRESNDNTSTLACGTSSGSGRP 360
           N+  +Y  N G+ + E+N   +  A G S  SG P
Sbjct: 283 NKRIRYKKNIGKAQEEANLYAAKKAAGASPYSGTP 317


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +2

Query: 416 KWRLQIVREIAKKVAQIQNAGLGEFRIRDLNDEINKLMREKRHWEVQIKSL 568
           K+ L       KKV  +    +G F +  LN+E  KL    + W+V   SL
Sbjct: 18  KFELPTTHNCLKKVLLLSQI-VGVFPLNHLNEEPEKLHFTFKSWKVLYTSL 67


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 390 SDARYGRRSRWPPAS*TCAARQRASVVIAFSAFL 289
           S +RYGRRS W         +Q+A   +A +A L
Sbjct: 74  SGSRYGRRSNWFKIHCLLQEQQQAGANMAAAANL 107


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 488 TLRDRHSVFVPLFS 447
           TL DR+ VFV LF+
Sbjct: 176 TLSDRYKVFVDLFN 189


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 488 TLRDRHSVFVPLFS 447
           TL DR+ VFV LF+
Sbjct: 336 TLSDRYKVFVDLFN 349


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 488 TLRDRHSVFVPLFS 447
           TL DR+ VFV LF+
Sbjct: 336 TLSDRYKVFVDLFN 349


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 653 SICIPGCPALLSRPGP 606
           S+ +PG P ++S  GP
Sbjct: 143 SLQVPGAPMMMSSHGP 158


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,239
Number of Sequences: 336
Number of extensions: 3478
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)