Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_L12
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0517 - 23599154-23600089                                        169   2e-42
06_01_0679 - 4972996-4973010,4973818-4973936,4974038-4974128,497...    34   0.10 
10_06_0166 + 11392172-11392715,11392796-11392803                       30   2.2  
05_05_0266 - 23694466-23696787,23696885-23697187                       29   2.9  
07_01_1026 - 8865924-8866225,8867051-8867297,8867561-8867587           29   5.2  
01_07_0326 - 42750189-42750965                                         29   5.2  
09_06_0310 - 22212348-22212695,22213561-22213766,22213796-222139...    28   6.8  

>02_04_0517 - 23599154-23600089
          Length = 311

 Score =  169 bits (411), Expect = 2e-42
 Identities = 88/147 (59%), Positives = 104/147 (70%), Gaps = 8/147 (5%)
 Frame = +2

Query: 284 MARNAEKAMTTLARWRAAQVQEAGGQRERRPYLASECNDLPQAEKWRLQIVREIAKKVAQ 463
           MARN EKA + L R+   + +E    RERRPYLASEC DL  AE+WR +I+REI  KVA+
Sbjct: 1   MARNEEKAQSMLNRFITMKQEEKRKPRERRPYLASECRDLADAERWRSEILREIGAKVAE 60

Query: 464 IQNAGLGEFRIRDLNDEINKLMREKRHWEVQIKSLGGPDHARV--GPKMLDQDGKEV--- 628
           IQN GLGE R+RDLNDEINKL+RE+ HWE +I  LGG DH+R    P M D DG  V   
Sbjct: 61  IQNEGLGEHRLRDLNDEINKLLRERGHWERRIVELGGRDHSRSSNAPLMTDLDGNIVAIP 120

Query: 629 -PGNR--GYKYFGAAKDLPGVRELFEQ 700
            P  R  GY+YFGAAK LPGVRELF++
Sbjct: 121 NPSGRGPGYRYFGAAKKLPGVRELFDK 147


>06_01_0679 -
           4972996-4973010,4973818-4973936,4974038-4974128,
           4974193-4974435
          Length = 155

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 17/30 (56%), Positives = 20/30 (66%)
 Frame = +2

Query: 293 NAEKAMTTLARWRAAQVQEAGGQRERRPYL 382
           N  + +TT AR R A+ QEAGG R RRP L
Sbjct: 22  NRTRGITTGARRRGARRQEAGGARRRRPAL 51


>10_06_0166 + 11392172-11392715,11392796-11392803
          Length = 183

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = -3

Query: 483 PRPAFCICATFFAISLTICNLHFSACGKSLHSDARYGRRSRWPPAS*TCAARQRASVVIA 304
           P P      +   + L +    FSA     H  A + RR   PPA+  C AR+R   ++A
Sbjct: 2   PHPNIAASCSPSCLLLAVAVTFFSATASISHGAAHHARRVPAPPAA--CVARER-DALLA 58

Query: 303 F 301
           F
Sbjct: 59  F 59


>05_05_0266 - 23694466-23696787,23696885-23697187
          Length = 874

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 401 LPQAEKWRLQIVREIAKKVAQIQNAGLGEFRIRDL-NDEI 517
           +P A    + +V E+AK   Q+    L EFR R+L ND I
Sbjct: 701 MPAAHSRAINVVPEVAKSERQMDEEYLNEFRSRNLGNDAI 740


>07_01_1026 - 8865924-8866225,8867051-8867297,8867561-8867587
          Length = 191

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 317 LARWRAAQVQEAGGQRERRPYLASECNDLPQAEKWRLQIVREIAK 451
           LARWR  +   + G+R RR  LA   +  P    W   +  ++ +
Sbjct: 36  LARWRWRRQGSSAGRRSRRVGLAERGSGAPARPVWLCAVAAKVGR 80


>01_07_0326 - 42750189-42750965
          Length = 258

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 401 LPQAEKWRLQIVREIAKKVAQIQNAGLGEFRIRDLNDE 514
           +P A    + +V E+AK   Q+    L EFR R+L  +
Sbjct: 124 MPAAHSRAINVVPEVAKSERQMDEEYLNEFRSRNLGSD 161


>09_06_0310 -
           22212348-22212695,22213561-22213766,22213796-22213905,
           22214351-22214427,22214466-22214486,22214518-22215651
          Length = 631

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 485 EFRIRDLNDEINKLMREKRHWEVQIKS 565
           E ++RDL   +++L+REK H  V ++S
Sbjct: 307 ESKVRDLEARVDELLREKEHIGVLLRS 333


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,807,507
Number of Sequences: 37544
Number of extensions: 391030
Number of successful extensions: 1161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)