Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_L12
         (743 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)                        212   3e-55
SB_43841| Best HMM Match : PXA (HMM E-Value=1e-16)                     31   1.3  
SB_48826| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_47305| Best HMM Match : I-set (HMM E-Value=0)                       29   5.3  
SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)         29   5.3  
SB_28873| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_54232| Best HMM Match : Pkinase (HMM E-Value=1.1e-39)               28   9.2  
SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)            28   9.2  

>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
          Length = 675

 Score =  212 bits (517), Expect = 3e-55
 Identities = 94/120 (78%), Positives = 109/120 (90%)
 Frame = +2

Query: 344 QEAGGQRERRPYLASECNDLPQAEKWRLQIVREIAKKVAQIQNAGLGEFRIRDLNDEINK 523
           Q+     ERRP+LA+EC++L +AEKWR QI+RE+AKKVAQIQNAGLGEFRIRDLNDEINK
Sbjct: 75  QDRRKHSERRPFLATECDNLQEAEKWRHQIIREVAKKVAQIQNAGLGEFRIRDLNDEINK 134

Query: 524 LMREKRHWEVQIKSLGGPDHARVGPKMLDQDGKEVPGNRGYKYFGAAKDLPGVRELFEQE 703
           L+REKRHWE +IK LGGPD+ ++GPKMLD +GKEVPGNRGYKYFGAAK+LPGVRELFEQE
Sbjct: 135 LLREKRHWEDRIKELGGPDYGKIGPKMLDHEGKEVPGNRGYKYFGAAKELPGVRELFEQE 194


>SB_43841| Best HMM Match : PXA (HMM E-Value=1e-16)
          Length = 848

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +2

Query: 434 VREIAKKVAQIQNAGLG---EFRIRDLNDEINKLMREKRHWEVQIKSLGGPDH 583
           +R I K+  Q  N  L    + R R+L   IN+    K   E +IK LGGPD+
Sbjct: 313 LRGIEKQNQQTDNQPLNKDAQLRTRNLKRYINQCTVAKAQCEKRIKLLGGPDY 365


>SB_48826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +1

Query: 232 NLNGLDPKNRNCKYNLNHGQKRRESNDNTSTLACGTSSGSGRPARTTSVPCI 387
           N N     N N   N N+      SN+NT +    TS+ +  P  TT+   I
Sbjct: 71  NNNNTTTSNNNNNNNNNNNNSSSSSNNNTISATVATSTTTILPLATTTTTTI 122


>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
          Length = 5832

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +2

Query: 548  EVQIKSLGGPDHARVGPKMLDQDGKEVPGNRGYK 649
            E+++ S+GGP+  ++   ++ Q   +V    G+K
Sbjct: 3471 EIKVPSMGGPEEKKISKALIGQGDNDVQAVEGWK 3504


>SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)
          Length = 2024

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 437 REIAKKVAQIQNAGLGEFRIRDLNDEINKLMREK 538
           R++++K  Q+Q   +G+  +R   DE N+LM  +
Sbjct: 362 RKVSEKEDQLQRLNMGKNSVRGKRDEANRLMSSR 395


>SB_28873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 274 NLNHGQKRRESNDNTSTLACGTSSGSGRPARTTSVPC 384
           N+N+G KR +  DNT T             + T VPC
Sbjct: 96  NMNNGNKRTKVLDNTQTRHTSGVGNMNNGNKRTKVPC 132


>SB_54232| Best HMM Match : Pkinase (HMM E-Value=1.1e-39)
          Length = 1123

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 471  FCICATFFAISLTICNLHFSACGKSLHSDA 382
            FC CA     S++ C   F  CG++LH DA
Sbjct: 1015 FCGCAKTCKASIS-CQPKFKFCGETLHLDA 1043


>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
          Length = 1197

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 247 DPKNRNCKYNLNHGQKRRESNDN 315
           D K ++C Y+ N G+ RRE+ D+
Sbjct: 137 DTKGKDCGYDRNRGKDRRENYDD 159


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,774,941
Number of Sequences: 59808
Number of extensions: 451457
Number of successful extensions: 2489
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2480
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)