Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_L12
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72510-2|CAA96652.1|  267|Caenorhabditis elegans Hypothetical pr...   173   1e-43
AY373340-1|AAQ76550.1| 1007|Caenorhabditis elegans BAM-2 protein.      29   2.6  
AC024853-1|AAO21419.1| 1007|Caenorhabditis elegans Branching abn...    29   2.6  
U97191-3|AAB52430.2|  133|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical...    28   6.1  

>Z72510-2|CAA96652.1|  267|Caenorhabditis elegans Hypothetical
           protein F53B7.3 protein.
          Length = 267

 Score =  173 bits (420), Expect = 1e-43
 Identities = 79/139 (56%), Positives = 103/139 (74%)
 Frame = +2

Query: 284 MARNAEKAMTTLARWRAAQVQEAGGQRERRPYLASECNDLPQAEKWRLQIVREIAKKVAQ 463
           MARNAEKAMT LARWR  + +E  G   RRP+   +C +L  AE++R +IVR+ +KK+  
Sbjct: 1   MARNAEKAMTALARWRRMKEEEERGPIARRPHDVKDCRNLSDAERFRREIVRDASKKITA 60

Query: 464 IQNAGLGEFRIRDLNDEINKLMREKRHWEVQIKSLGGPDHARVGPKMLDQDGKEVPGNRG 643
           IQN GLGEF++RDLNDE+N+L++ K  WE +I+ LGG D+ +   K LD  G+E   +RG
Sbjct: 61  IQNPGLGEFKLRDLNDEVNRLIKLKHAWEQRIRELGGTDYRKYAQKELDAIGRETGNSRG 120

Query: 644 YKYFGAAKDLPGVRELFEQ 700
           YKYFGAAKDLPGVRELFE+
Sbjct: 121 YKYFGAAKDLPGVRELFEK 139


>AY373340-1|AAQ76550.1| 1007|Caenorhabditis elegans BAM-2 protein.
          Length = 1007

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = +1

Query: 160 ELSLFL*ESTSNTIQLHFKIKFY*NLNGLDPKNRN--CKYNLNHGQKRRESNDNTSTL-- 327
           EL   + + T  TI L   +    N+  +DP + N  C Y+ +  QKR +   +T T+  
Sbjct: 282 ELGKSISDDTDKTITLSISVNG--NIQLIDPTDTNDDCMYSFDKPQKRLQETVSTRTMCV 339

Query: 328 ACGTSSGSG 354
            CG    SG
Sbjct: 340 GCGCPKLSG 348


>AC024853-1|AAO21419.1| 1007|Caenorhabditis elegans Branching
           abnormal protein 2 protein.
          Length = 1007

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = +1

Query: 160 ELSLFL*ESTSNTIQLHFKIKFY*NLNGLDPKNRN--CKYNLNHGQKRRESNDNTSTL-- 327
           EL   + + T  TI L   +    N+  +DP + N  C Y+ +  QKR +   +T T+  
Sbjct: 282 ELGKSISDDTDKTITLSISVNG--NIQLIDPTDTNDDCMYSFDKPQKRLQETVSTRTMCV 339

Query: 328 ACGTSSGSG 354
            CG    SG
Sbjct: 340 GCGCPKLSG 348


>U97191-3|AAB52430.2|  133|Caenorhabditis elegans Hypothetical
           protein F53F10.3 protein.
          Length = 133

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 663 AAPKYLYPRLPGTSFPSWSNILGP 592
           A  K++YP LP  + P+W++  GP
Sbjct: 14  AGDKFVYPVLPAFAKPAWNHAAGP 37


>AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical
           protein Y111B2A.14 protein.
          Length = 1481

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 286 GQKRRESNDNTSTLACGTSSGSGRPARTTSVPCIRM 393
           G+K  +S+D++S+ +  +   +G P  T + P IRM
Sbjct: 168 GEKSSKSSDSSSSSSSDSEDAAGPPRMTGAPPSIRM 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,198,871
Number of Sequences: 27780
Number of extensions: 357657
Number of successful extensions: 1237
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)