Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_L12
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   7.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.2  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    21   9.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.2  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 431 SVTSTSQLVANHYILMQGTDVVLAGL 354
           +V+S  +     Y L   TD+VLAGL
Sbjct: 18  TVSSGERDTRTEYYLPNWTDLVLAGL 43


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 152 KYVTTEIDEIQLYL 111
           KYV   ID +QLY+
Sbjct: 472 KYVAMVIDRLQLYI 485


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 12/46 (26%), Positives = 18/46 (39%)
 Frame = -1

Query: 473 HSVFVPLFSQFL*QSVTSTSQLVANHYILMQGTDVVLAGLPLPELV 336
           H ++ P F      S    S L A +     GT +    +  PEL+
Sbjct: 6   HPIYAPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELI 51


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = -3

Query: 483 PRPAFCICATFFAISLTICNLHFSAC--GKSL 394
           PR    +CA+   I    C LH +AC  G SL
Sbjct: 111 PRRHRPVCASNGKIYANHCELHRAACHSGSSL 142


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 24  FXSTQFHLTKHLLASKNQL-*VSXKXLAF 107
           F ST+  LTK   A +NQL  VS   +AF
Sbjct: 453 FCSTEKRLTKQNTAFENQLQFVSDAVMAF 481


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,332
Number of Sequences: 438
Number of extensions: 4854
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)