Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_L11
         (515 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)        108   3e-24
SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)                        27   9.2  

>SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)
          Length = 131

 Score =  108 bits (259), Expect = 3e-24
 Identities = 62/120 (51%), Positives = 74/120 (61%)
 Frame = +3

Query: 48  KVQCSXLRPKXQKALFKQLEXLKPXLTNLRVAKVTGGVASKLSKXRVVRKAIARVYIVYH 227
           KV+   LR K +  L KQL+ LK  L+ LRVAKVTGG ASKLSK +VVRK++ARV  V  
Sbjct: 11  KVKAHELRGKKKDELLKQLDELKTELSQLRVAKVTGGAASKLSKIKVVRKSVARVLTVVS 70

Query: 228 QKMXXXXXXXXXXXXXXPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 407
           Q                PLDLR K TRAMR++LTK EA  KT K+ +K + F  R YAVK
Sbjct: 71  QTQRDNLRKFYRKKKYLPLDLRPKLTRAMRRSLTKKEASSKTLKQQKKLAHFSLRKYAVK 130


>SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 726

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 394 TLGGKRDFFLISFLVLIFASCLVRALRIARVFLALKS 284
           TL G R F       L++ S LV+  RIAR+F   KS
Sbjct: 511 TLCGIRRFGTGISFCLLYTSLLVKTNRIARIFSGTKS 547


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,873,972
Number of Sequences: 59808
Number of extensions: 147981
Number of successful extensions: 392
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)