Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_L11
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal prote...   100   1e-21
Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical pr...    27   6.0  
X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    27   6.0  

>L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 35 protein.
          Length = 123

 Score = 99.5 bits (237), Expect = 1e-21
 Identities = 56/123 (45%), Positives = 73/123 (59%)
 Frame = +3

Query: 42  MGKVQCSXLRPKXQKALFKQLEXLKPXLTNLRVAKVTGGVASKLSKXRVVRKAIARVYIV 221
           M K++C  LR + + AL K+L+  K  L  LRV+KVTGG ASKLSK RVVRK IAR+  V
Sbjct: 1   MTKLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTV 60

Query: 222 YHQKMXXXXXXXXXXXXXXPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 401
            +Q                P+DLR KKTRA+R+ LT HE  +++ K+  K      R +A
Sbjct: 61  INQTQKQELRKFYADHKYKPIDLRLKKTRAIRRRLTAHELSLRSAKQQAKSRNQAVRKFA 120

Query: 402 VKA 410
           VKA
Sbjct: 121 VKA 123


>Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical
           protein M01E5.5b protein.
          Length = 734

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 282 LDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 374
           +D   K+ R +RKA+TK E  KIK  KE   K
Sbjct: 275 IDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 306


>Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical
           protein M01E5.5a protein.
          Length = 806

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 282 LDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 374
           +D   K+ R +RKA+TK E  KIK  KE   K
Sbjct: 347 IDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 378


>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 282 LDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 374
           +D   K+ R +RKA+TK E  KIK  KE   K
Sbjct: 347 IDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,238,826
Number of Sequences: 27780
Number of extensions: 104885
Number of successful extensions: 309
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)