Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_L10
(615 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo... 195 4e-51
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo... 31 0.17
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 2.2
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 26 3.8
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 6.6
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ... 25 6.6
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 25 6.6
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo... 25 8.7
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 25 8.7
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 25 8.7
>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 195 bits (476), Expect = 4e-51
Identities = 97/200 (48%), Positives = 126/200 (63%), Gaps = 2/200 (1%)
Frame = +1
Query: 1 TPMGSFRXXXXXXXXXXXXXXXXNAAIERAGIPKEEIKEVYIGNVCSANLGQAPARQAVI 180
TPMGSF A+ER I ++ EV++GNV SANLGQ PARQ +
Sbjct: 14 TPMGSFGGSFASLPATKLGSIAIKGALERVNIKPSDVDEVFMGNVVSANLGQNPARQCAL 73
Query: 181 FAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVPFYLKRGE-- 354
AGLP+S +CTTVNKVCASGMK+ +L AQ + TG +I++AGG ESMSN P+Y +
Sbjct: 74 GAGLPRSIVCTTVNKVCASGMKATILGAQTIMTGNAEIVVAGGTESMSNAPYYAPKNRFG 133
Query: 355 TSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITXQDQDEYAVNSYKRSAAAYE 534
YG ++LVDG++ DGL+D Y+ MGN AE A++ I QD +A++SYKR+ A
Sbjct: 134 AKYGNVELVDGLLRDGLSDAYDGLPMGNAAELCAEEHSIDRASQDAFAISSYKRAQNAQA 193
Query: 535 AKAFVDELVPVPVPQKRGAP 594
KAF E+VPV VP RG P
Sbjct: 194 TKAFEQEIVPVEVPVGRGKP 213
>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 30.7 bits (66), Expect = 0.17
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 214 TVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSN 327
T CA+G +I A ++ G D+I+AGG ES N
Sbjct: 165 TTTTACAAGCHAIGDAFNFIKLGHADVIIAGGSESCIN 202
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +2
Query: 410 MCTTNFTWEIVLKTQQKNYKLLXKIKMNMLSIVTREV 520
+ + + W + KT++ YKL+ M + S+V E+
Sbjct: 409 IAASGYVWHVGSKTERSRYKLMLDCVMIITSVVPSEL 445
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 26.2 bits (55), Expect = 3.8
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3
Query: 174 CNICRFAKKYHMYNCKQSMC 233
CN+C + KY NC S C
Sbjct: 102 CNVCGYWGKYACQNCGTSYC 121
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +3
Query: 126 WQCLFCKFGPSTCKTSCNICRFAKKYHM 209
W C C F +TSC C F H+
Sbjct: 347 WNCPMCGFSNFQRRTSCFRCSFPGPTHV 374
>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 366 RNAVS*WNSV*WAHRCVQQISHGKLC*KHSKKITNYXT 479
++A S N+ WA R +I KLC H I Y T
Sbjct: 43 KHATSCMNAGVWARRMASEIQLHKLCNGHKNIIHFYNT 80
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 249 RFHARGTYFVYSCTYGTF 196
RF R Y +YSC YG+F
Sbjct: 467 RFLRRLLYHLYSCQYGSF 484
>SPBC1711.13 |his2||histidinol dehydrogenase His2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 25.0 bits (52), Expect = 8.7
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +1
Query: 184 AGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVPF 336
AG P I T V K + + +A + GA+ IILAGG ++++ + +
Sbjct: 154 AGCPHVVISTPVRKDGTVAPEIVYIANK---IGAEAIILAGGAQAIAAMAY 201
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 110 ISSLGIPALSIAALTATAPNSDADKLDKXPRK 15
+S+LG +L + T T N+D+DK P K
Sbjct: 410 VSTLGNVSLKTPSDTFTLTNTDSDKKTSKPEK 441
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = +1
Query: 403 LTDVYNKFHMGNCAENTAKKLQITXQDQDEYAV--NSYKRSAAAYEAK 540
+T+++ K H + +ENT + T Q V N + YE K
Sbjct: 1 MTEIFGKLHRSSNSENTNQASPSTIQSHSTQPVLSNDHSTKVNDYEGK 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.132 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,461
Number of Sequences: 5004
Number of extensions: 47774
Number of successful extensions: 155
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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