Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_L09
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26641| Best HMM Match : FMN_dh (HMM E-Value=0.022)                  29   4.7  
SB_12139| Best HMM Match : Autotransporter (HMM E-Value=1.4)           28   6.2  
SB_29634| Best HMM Match : Endonuclease_7 (HMM E-Value=8.2)            28   6.2  
SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0)               28   8.3  

>SB_26641| Best HMM Match : FMN_dh (HMM E-Value=0.022)
          Length = 181

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +1

Query: 406 NMERRVLMENLDAVMLAFDEICDGGVILDADPTSIVSRAALRTEDVPLGEQTVAQVLQSA 585
           +++R      ++AV        DGGV LD D    ++           GE++V+ +L+  
Sbjct: 78  SIQRLACCRIVNAVQSKLSVYMDGGVRLDTDVFKALALGVRAVFLGRAGEESVSYILELL 137

Query: 586 REQLK 600
           RE+L+
Sbjct: 138 REELR 142


>SB_12139| Best HMM Match : Autotransporter (HMM E-Value=1.4)
          Length = 751

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 590 SLADCNTWATVCSPRGTSSVRSAAR 516
           ++A CNT  T C P G + +R  AR
Sbjct: 297 NMAGCNTRLTTCRPGGKAPLRKCAR 321


>SB_29634| Best HMM Match : Endonuclease_7 (HMM E-Value=8.2)
          Length = 111

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = -2

Query: 187 GRLYRNIWPKFCFLHSPKCTXP*Q-CTMWVRTENLPXLCEPLCGXRIXHWMMIXKNXKMH 11
           G L +   PK  + H P+   P + C +  R+E    LC P    R+  WM + +     
Sbjct: 38  GHLLQGAPPKAPYGHPPRRAVPCRICGVGTRSER--RLCRPCGANRVGQWMRVVQRRARK 95

Query: 10  R 8
           R
Sbjct: 96  R 96


>SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0)
          Length = 394

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = +1

Query: 352 LQSVLNALYESVSLLLRRNMERRVLMENLDAVM--LAFDEICDGGVILDADPTS 507
           L  +LNAL   VSLL+R N     ++ N D+++  +  +EI D G+ L  + T+
Sbjct: 174 LAGILNALGSRVSLLIRYNN----VIRNFDSMLSGMLTEEIKDSGIDLCTNTTT 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,378,897
Number of Sequences: 59808
Number of extensions: 446903
Number of successful extensions: 1067
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)