Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_L08
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    28   1.2  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    27   3.6  
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    26   4.8  
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    26   4.8  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    26   6.3  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    25   8.4  
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        25   8.4  
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    25   8.4  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = -1

Query: 511 SHPNGLQQ*ATSFEKMSSATCWPYAIVEARNDTRIDICADNWKFVFFEPYNAILTRNVFN 332
           S PN  Q      E   SAT  P A+ + +N T +  CA + +  F     AILT  +F 
Sbjct: 14  SVPNLAQAPPAYSEYNESATENP-AVDQFKNTTPVAECAKSIRMAFLRKVYAILTAQLF- 71

Query: 331 ISAIYG 314
           +++++G
Sbjct: 72  VTSLFG 77


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 137 EWYENDGAIKLMPVTGVAILK 199
           +W+ NDGA   +  TG A+ K
Sbjct: 750 DWWGNDGAFNTLDATGAAVRK 770


>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 17  EPQGILEVVEQQKNQVEFDQXLYEXGSIEKXVKINTLCK 133
           EP+G +E  E Q+ Q+  D+       + + VKI  L K
Sbjct: 137 EPEGEVETAEVQEPQIVSDEEYTMEEEVAEPVKIPVLAK 175


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 256 FDPNSYIHNTDDSCITTT 203
           FDPN Y  NT+D  +T+T
Sbjct: 277 FDPNVYALNTNDGPVTST 294


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -1

Query: 520 LAVSHPNGLQQ*ATSFEKMSSATCWPYAIVEARNDTRID--ICADNWKFVFFEP 365
           L V+ P  ++  + SF   S  T WP  I    +DT  D  I + NWK  F+EP
Sbjct: 182 LRVAKPANIRGISLSFTGRSR-TEWPEGIPVKGHDTYEDKVIISHNWK--FYEP 232


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 424 RNDTRIDICADNWKFVFFEP 365
           R+D+ ID+   N K +FF+P
Sbjct: 695 RSDSHIDLLFSNMKHLFFQP 714


>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 319 KWR*Y*RHSLSVLRCRARKIRTSS 390
           KW    RH  ++LR +AR+IR SS
Sbjct: 171 KWTNATRHRQALLRTQARRIRISS 194


>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 71  DQXLYEXGSIE-KXVKINTLCKVEWYENDGAIKLMPVTGVAILKKGR 208
           D  +Y  G ++   VK+N   +V WY+  G +  +PV   +I K+ R
Sbjct: 226 DLSIYFGGDVDTSTVKVN---RVNWYDPCGKLAKVPVDEESIPKEER 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,073,449
Number of Sequences: 5004
Number of extensions: 66067
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)