Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_L08
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0432 + 33879916-33880348,33881620-33881936,33882195-338822... 31 1.2
08_02_0021 + 11307795-11308093,11308454-11308556,11309623-113099... 29 3.8
03_06_0036 + 31208993-31209391,31209616-31209693,31209881-312099... 29 3.8
05_07_0283 - 28937027-28937110,28937211-28937549,28937641-289377... 29 5.0
04_04_1605 - 34729853-34730173,34730385-34730628,34730729-34730940 29 5.0
02_04_0090 - 19643182-19643322,19644192-19644335,19644563-196446... 29 5.0
01_04_0049 - 15422996-15423407,15423954-15424114 29 5.0
08_02_1446 + 27156449-27156790,27157961-27158042,27158698-271587... 28 6.6
05_06_0107 + 25617949-25618305,25618559-25618993 28 8.7
05_04_0270 - 19598062-19598694,19598797-19599154,19599247-195994... 28 8.7
>03_06_0432 +
33879916-33880348,33881620-33881936,33882195-33882281,
33882690-33883253
Length = 466
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +2
Query: 374 KYELPVIGTYVDPRIIPGFHYRVRPAGSRRHLFEGRSLLLQSIGMG 511
KY P I Y++ + G +RV PAG+R LFE R +G+G
Sbjct: 321 KYS-PTITQYMEEKSKKGAMHRVWPAGNRELLFEIRLRDKSGVGIG 365
>08_02_0021 +
11307795-11308093,11308454-11308556,11309623-11309931,
11310190-11310618
Length = 379
Score = 29.1 bits (62), Expect = 3.8
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Frame = -2
Query: 654 PPFPVILNFIPG*MARGSMPT------PSGCESDQK*FSGVLSESGLKVMRLPYPIPMDC 493
PP PV++ P A S P P GC S + +G S+ L+ RL P P+
Sbjct: 169 PPPPVLVPHTPASAAAASHPRLRCRCEPRGCSSGRIEGAGAASDRRLRCRRLGPPPPL-- 226
Query: 492 NSKLRPSKRCLRLPAGLTR*W 430
LR ++ L + AG+ R W
Sbjct: 227 --PLRAAR--LLVTAGMDRSW 243
>03_06_0036 +
31208993-31209391,31209616-31209693,31209881-31209946,
31211556-31211621,31211815-31211865,31212635-31212928
Length = 317
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = -2
Query: 372 SSPTTQY*QGMSLISAPFTVTRLEDDWMPGFSS*PFRSCLIPIATFTTRTTAASPRPFFR 193
SSPTT+ +S +S+ T T + P F R C AT T + RP R
Sbjct: 102 SSPTTECSSSVSSMSSSPTATAISSSKSPAFKKKGSRGCDQRKATAPAAATTTNKRPRVR 161
>05_07_0283 -
28937027-28937110,28937211-28937549,28937641-28937754,
28937843-28937955,28939050-28939087,28939315-28939478,
28939746-28939794,28940986-28941152
Length = 355
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 191 ILKKGRGDAAVVRVVNVAIGIKQLRKGYELKPGIQ 295
++ K RGD AV +VN+A K R+G + PG Q
Sbjct: 6 VVGKSRGDTAVTTIVNLAEEAKLAREGVK-GPGYQ 39
>04_04_1605 - 34729853-34730173,34730385-34730628,34730729-34730940
Length = 258
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 512 YGKRITFKPDSLNTPENYFWSDSHPEGVGMEPRAIHPGMKFSITGNGG 655
+ K++ P LN+P + +P+ + + A+HP FS + GG
Sbjct: 5 FQKQVAHAPAELNSPRSSAAKPKNPDEILRDFHALHPIEAFSTSFGGG 52
>02_04_0090 -
19643182-19643322,19644192-19644335,19644563-19644626,
19644710-19644796,19645371-19645513,19645706-19645771,
19645954-19646046,19646165-19646230,19646363-19646433,
19646882-19646982,19647217-19647317,19647421-19647528,
19647639-19648064
Length = 536
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 239 HSQHGRQLHHHDPSSEWQHQ*RA 171
H HGR H H PS W+H RA
Sbjct: 49 HHHHGR--HPHPPSPRWRHDVRA 69
>01_04_0049 - 15422996-15423407,15423954-15424114
Length = 190
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = -2
Query: 717 YSVFSST*GRSARKTLASPKRPPFPVILNFIPG*MARGSMPTPSGCESDQK*FSGVLSES 538
Y V SS G SA + P + ++L + ARGS GC SD++ G ++
Sbjct: 50 YLVNSSGSGTSAAASTGRPHQRRHRLVLRLLRLQAARGSTRCSQGCPSDRRRVRGAAQDA 109
Query: 537 GLK 529
++
Sbjct: 110 TIQ 112
>08_02_1446 +
27156449-27156790,27157961-27158042,27158698-27158792,
27159421-27159492,27159572-27159651,27159728-27159827,
27160064-27160141,27160408-27160455,27160570-27160638,
27161035-27161175,27161262-27161516
Length = 453
Score = 28.3 bits (60), Expect = 6.6
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -3
Query: 239 HSQHGRQLHHHDPSSEWQH 183
H QH + HHH WQH
Sbjct: 66 HQQHYQPHHHHQHHQHWQH 84
>05_06_0107 + 25617949-25618305,25618559-25618993
Length = 263
Score = 27.9 bits (59), Expect = 8.7
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = -1
Query: 652 PISCNTEFHSWMNGAWLHAYTFRMRVGPE 566
P++ + W +G W AYT +++ P+
Sbjct: 157 PVADELDIWKWDHGLWTRAYTINLKLWPD 185
>05_04_0270 -
19598062-19598694,19598797-19599154,19599247-19599491,
19599869-19599877,19599909-19599977,19600043-19600552
Length = 607
Score = 27.9 bits (59), Expect = 8.7
Identities = 25/92 (27%), Positives = 40/92 (43%)
Frame = -1
Query: 535 LKSDALAVSHPNGLQQ*ATSFEKMSSATCWPYAIVEARNDTRIDICADNWKFVFFEPYNA 356
L+ AL VS P ++Q S S+ + R +T +D+C D W F N
Sbjct: 501 LQRFALVVSRPMFMRQCMESHSNPSTVL----KFLPIRFETSMDLCVDFWVFA----VNM 552
Query: 355 ILTRNVFNISAIYGNSS*RRLDAGL*FVTLSE 260
+ +V + I+ N+ R A L F++ E
Sbjct: 553 VNAADVHRVLYIFVNNFGRMFPARLNFLSKVE 584
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,336,438
Number of Sequences: 37544
Number of extensions: 451069
Number of successful extensions: 1175
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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