Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_L08
(730 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43772| Best HMM Match : DUF243 (HMM E-Value=3) 114 8e-26
SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9) 68 7e-12
SB_26019| Best HMM Match : F5_F8_type_C (HMM E-Value=2.6e-29) 34 0.10
SB_7689| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_24311| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31
SB_40186| Best HMM Match : Extensin_2 (HMM E-Value=0.0036) 30 2.2
SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0) 30 2.2
SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018) 29 2.9
SB_56855| Best HMM Match : Viral_Rep (HMM E-Value=4.5) 29 3.9
SB_15904| Best HMM Match : Collagen (HMM E-Value=4.1e-11) 29 5.1
SB_15500| Best HMM Match : Fork_head (HMM E-Value=1.7e-39) 29 5.1
SB_59448| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_32318| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_7282| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_957| Best HMM Match : Lactamase_B (HMM E-Value=0.38) 28 6.7
SB_52337| Best HMM Match : Pox_A32 (HMM E-Value=0.16) 28 6.7
SB_49877| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_24169| Best HMM Match : Pox_A32 (HMM E-Value=0.16) 28 6.7
SB_40708| Best HMM Match : SRCR (HMM E-Value=0) 28 8.9
SB_27733| Best HMM Match : Filamin (HMM E-Value=0.22) 28 8.9
>SB_43772| Best HMM Match : DUF243 (HMM E-Value=3)
Length = 472
Score = 114 bits (274), Expect = 8e-26
Identities = 60/148 (40%), Positives = 86/148 (58%), Gaps = 3/148 (2%)
Frame = +2
Query: 284 PGIQSSSRRVTVNGADIK-DIPCQYCVVGLEKYELPVIGTYVDPRIIPGFHYRVRPAGSR 460
PG++ + + AD K DIP Y + L +ELPV+GT+V ++PGF YRVR G++
Sbjct: 141 PGVKPLANAWSFVQADAKTDIPTTYQIPRLAAHELPVVGTFVHQHVVPGFPYRVRLNGTK 200
Query: 461 RHLFEGRSLLLQSIGMGYGKRITFKPDSLNTPENYFWSDSHP-EGVGMEPRAIHPGMKFS 637
LFEG L+LQS+G GYGKR++F+ + + ENYFWSDS+P EG G K+S
Sbjct: 201 EFLFEGNPLVLQSVGQGYGKRLSFESEDVLYNENYFWSDSNPEEGYAFSISLSLGGHKYS 260
Query: 638 ITG-NGGLLGEASVFRADLPQVEEKTEY 718
+ G LG + + QV +K +
Sbjct: 261 VLDRQGKALGNVEILKNGEKQVVKKKRF 288
>SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9)
Length = 646
Score = 68.1 bits (159), Expect = 7e-12
Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Frame = +2
Query: 443 RPAGSRRHLFEGRSLLLQSIGMGYGKRITFKPDSLNTPENYFWSDSHPE-GVGMEPRAIH 619
R GS +LFEG+++LL+ +G GYGKR+TF+ + + +N+FWSDS+P+ G + +
Sbjct: 2 RVGGSDDYLFEGKAVLLERVGAGYGKRLTFESEDVLHNDNFFWSDSNPDAGFAFSIQIVS 61
Query: 620 PGMKFSI-TGNGGLLGEASV 676
G F + G+ +GEA V
Sbjct: 62 QGETFRVFDGSSRYIGEAEV 81
>SB_26019| Best HMM Match : F5_F8_type_C (HMM E-Value=2.6e-29)
Length = 438
Score = 34.3 bits (75), Expect = 0.10
Identities = 34/109 (31%), Positives = 44/109 (40%)
Frame = +2
Query: 140 WYENDGAIKLMPVTGVAILKKGRGDAAVVRVVNVAIGIKQLRKGYELKPGIQSSSRRVTV 319
W E D M VTGV I GD + V + A+ I + + I S S +V
Sbjct: 321 WIEFDLG-HAMAVTGVTIDLATLGDLSTAWVTSFAVNISEDGMNWSPYADIGSKSPKVGE 379
Query: 320 NGADIKDIPCQYCVVGLEKYELPVIGTYVDPRIIPGFHYRVRPAGSRRH 466
A +P C + K V G + R IP H RV P GS R+
Sbjct: 380 GFASAFKVP-NVCNSNVRK--TAVAGNF--DRAIPAKHVRVIPVGSSRN 423
>SB_7689| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 612
Score = 33.9 bits (74), Expect = 0.14
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -2
Query: 270 PFRSCL--IPIATFTTRTTAASPRPFFRMATPVTGINLMAPSFSYHSTLHSVLILTXFSI 97
PF S + +A F++ TTA PF + T + +L+ P + S L S+ +L F +
Sbjct: 354 PFSSLTTALKLAPFSSLTTAIKLAPFSSLTTTLQACSLLLPYYDPSSLLPSLPLLRPFKL 413
Query: 96 EPXS 85
P S
Sbjct: 414 APFS 417
>SB_24311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 32.7 bits (71), Expect = 0.31
Identities = 45/153 (29%), Positives = 63/153 (41%), Gaps = 12/153 (7%)
Frame = +2
Query: 224 VRVVNVAIGIKQLRKGYELKPGIQSSSRRVTVNGADIKDIPCQYCV-VGLEKYELPV--- 391
+RV V G++ KGYE + V+ G + P Y + + + YE V
Sbjct: 1 MRVSPVGYGMRMSPKGYETLVSPKGFGTLVSPKGYGTRVSPVDYGMRMSPKGYETLVSPK 60
Query: 392 -IGTYVDP-----RIIP-GFHYRVRPAG-SRRHLFEGRSLLLQSIGMGYGKRITFKPDSL 547
GT V P R+ P G+ RV P G R +G L+ G+G R++
Sbjct: 61 GFGTLVSPKGYGTRVSPKGYGMRVSPVGYGMRMSPKGYETLVSP--KGFGTRVS------ 112
Query: 548 NTPENYFWSDSHPEGVGMEPRAIHPGMKFSITG 646
PE Y S PEG GM + GM+ S G
Sbjct: 113 --PEGYGTRVS-PEGYGMRVSPVGYGMRMSPKG 142
>SB_40186| Best HMM Match : Extensin_2 (HMM E-Value=0.0036)
Length = 362
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Frame = -2
Query: 270 PFRSCLIPIATFTTRTTAASPRPFFRMATP---VTGINLMAPSFSYHSTLHSVLILTXFS 100
PF + P+ TT + PF TP VT L +P+ + +T +L++T +
Sbjct: 20 PFLAATTPLLMVTTSPLTSPTIPFLATTTPLLMVTTSPLPSPTIPFLATTTPLLMVTTST 79
Query: 99 IEPXS*SXWSNST*FFCCSTTSKMP 25
+ P + + +T TTS +P
Sbjct: 80 LPPPTIPFLATTTPLLMV-TTSPLP 103
>SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 726
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 2 FDANHEPQGILEVVEQQKNQVEFDQXLYEXGS-IEKXVKINTLCKVEWYEND 154
FD+N + G +V++ +++ E D GS IE +K+NT EWY +D
Sbjct: 327 FDSNGDTSGKYDVLQYRRDG-EDDGRYVRVGSWIEGELKLNTSEITEWYVSD 377
>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
Length = 3561
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Frame = +2
Query: 467 LFEGRSLLLQSIGMGYGKRITFKPDSLN-------TPENYFWSDSHPEGVGMEPRAIHPG 625
+F RSL ++ G+ G R+T +++ + ++ SHP G G ++PG
Sbjct: 2457 IFTLRSLFIEGGGLFQGTRVTILAENITIDDGGRMASDGLGYNSSHPSGSGSRHGVVNPG 2516
Query: 626 MKF-SITGNGG 655
+ + S G+ G
Sbjct: 2517 VGYPSSEGSSG 2527
>SB_56855| Best HMM Match : Viral_Rep (HMM E-Value=4.5)
Length = 158
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 478 SFEKMSSATCWPYAIVEARNDTRIDICADNWKFVFF 371
++ K S WP A+ + +T IDI ++W ++ F
Sbjct: 34 NYAKKISFRPWPNALTDCARETWIDIKLNSWYYIVF 69
>SB_15904| Best HMM Match : Collagen (HMM E-Value=4.1e-11)
Length = 376
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +2
Query: 110 VKINTLCKVEWYENDGAIKLMPVTGVAILKKGRGDAAVVRV-VNVAIGIKQLRKGYELKP 286
V + + V + DG + ++ VT + ++ G GD VV V V V G + +
Sbjct: 6 VTVTVMVMVTVGDGDGGVVMVTVTVMVMVTVGDGDGGVVMVMVTVGDGDGDGSRSSQATY 65
Query: 287 GIQSSSRRV 313
G+ RRV
Sbjct: 66 GVSELQRRV 74
>SB_15500| Best HMM Match : Fork_head (HMM E-Value=1.7e-39)
Length = 554
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 286 RHPVVFKTSYRKWR*Y*RHSLSVLRCRARKIR 381
+H V F+ SY+ W+ RH+LS +C + +R
Sbjct: 165 KHYVFFRGSYQGWKNSVRHNLSFNKCFVKILR 196
>SB_59448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +2
Query: 206 RGDAAVVRVVNVAIGIKQLRKGYELKPGIQSSSRRVTVNGADIKDIPCQYCVVGLEKYEL 385
RG V RV+ + G + GY + G +S SR+++V + + C+ G + +
Sbjct: 164 RGQEFVTRVICIKAGTRVCHAGYVYQGGDKSLSRKLSVPRRGQEFVTRVICIKGGQGFVT 223
Query: 386 PVI 394
VI
Sbjct: 224 RVI 226
>SB_32318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 477 PSKRCLRLPAGLTR*WKPGMIRGSTYVPIT 388
P++RC P L + K G+IR TY P T
Sbjct: 44 PAERCPSSPQALNKYRKSGIIRNRTYQPET 73
>SB_7282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1702
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 432 WKPGMIRGSTYVPITGSSY 376
W PG+I GS Y PI SY
Sbjct: 1029 WVPGLIPGSDYCPIPAISY 1047
>SB_957| Best HMM Match : Lactamase_B (HMM E-Value=0.38)
Length = 236
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Frame = +1
Query: 178 HWCCHSEEGSW*--CSCRPCCECSYWDQTT 261
HW +G W C C+ E +WDQ+T
Sbjct: 128 HWYVPMGQGDWIKSCGCQNVKEMEWWDQST 157
>SB_52337| Best HMM Match : Pox_A32 (HMM E-Value=0.16)
Length = 591
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 521 RITFKPDSLNTPEN-YFWSDSHPEGVGMEPRAIHPGMKFSITGN 649
R+T P + + E Y EGV + P ++ G+ FSI+G+
Sbjct: 27 RVTLNPSTASPGETLYVAVPKQSEGVTLVPGSLRAGLDFSISGH 70
>SB_49877| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 607
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 394 RHICRSSYHSWLPLSRKASR 453
+H+C YHSW+P+ R+ R
Sbjct: 294 KHVC-DDYHSWIPVRRRTVR 312
>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 7645
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 256 FDPNSYIHNTDDSCITTTLLQNGNTSDGHQFNGAIV 149
F P+S I D +T T+ + G+T+ H+ A++
Sbjct: 1976 FKPDSVIFKESDGTVTLTVARRGDTTREHKVKVAVI 2011
>SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1388
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -1
Query: 277 FVTLSELFDPNSYIHNTDDSCITT--TLLQNGNTSDGHQFNGAI 152
F +L ELFD +Y N +D C+++ L SD Q G +
Sbjct: 58 FASLDELFDYINYYSNLEDDCVSSEDPFLGMTTPSDVQQGGGGV 101
>SB_24169| Best HMM Match : Pox_A32 (HMM E-Value=0.16)
Length = 591
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 521 RITFKPDSLNTPEN-YFWSDSHPEGVGMEPRAIHPGMKFSITGN 649
R+T P + + E Y EGV + P ++ G+ FSI+G+
Sbjct: 27 RVTLNPSTASPGETLYVAVPKQSEGVTLVPGSLRAGLDFSISGH 70
>SB_40708| Best HMM Match : SRCR (HMM E-Value=0)
Length = 1976
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +2
Query: 461 RHLFEGRSLLLQ---SIGMGYGKRITFKPDSLNTPENYFWSDSHPEGVG 598
RHL G++L + + G G GK + NT ++ F HP GVG
Sbjct: 1277 RHLKLGKALSFKGAAAYGAGNGKIVMDDLQCKNTEKSLFECKQHPAGVG 1325
>SB_27733| Best HMM Match : Filamin (HMM E-Value=0.22)
Length = 278
Score = 27.9 bits (59), Expect = 8.9
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +2
Query: 173 PVTGVAILKKGRGDAAVVRVVNVAIGIKQLRKGYELK---PGIQSSSRRVTVNGADIKDI 343
PV+ A ++K A V +NV I GYE P VTVNGA ++
Sbjct: 78 PVSVEAYVQKISTSAGPVIPLNVVIQFYDDGYGYEFTYTPPDDGYYKLSVTVNGARVRGS 137
Query: 344 PCQYCV 361
PC + V
Sbjct: 138 PCYWSV 143
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,358,199
Number of Sequences: 59808
Number of extensions: 518534
Number of successful extensions: 1666
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1662
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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