Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_L08
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.55 
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   2.2  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 600 MPTPSGCE--SDQK*FSGVLSESGLKVMRLPYPIPMD 496
           M  P+GC+  +D+   +  +  SGL V  +P  IPMD
Sbjct: 759 MTCPAGCKCYNDRTWNTNAVDCSGLGVEEIPRRIPMD 795


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 450 AGLTR*WKPGMIRGSTYV 397
           AG+ R ++PGMI G+T +
Sbjct: 176 AGIKRTYEPGMICGATII 193


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 333 ISAPFTVTRLEDDW 292
           +S  F+V R+EDDW
Sbjct: 349 LSYAFSVWRMEDDW 362


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 242 LHSQHGRQLHHHDPSSE 192
           L+ Q  +Q HH D SSE
Sbjct: 97  LYLQQQQQQHHQDSSSE 113


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 246 IATFTTRTTAASPRPFFRMAT 184
           I + T+  + +SP+PF R AT
Sbjct: 405 IESITSVNSTSSPKPFPRRAT 425


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 192 MATPVTGINLMAPSFSY 142
           MAT  +GIN   P  SY
Sbjct: 284 MATQTSGINASLPPVSY 300


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 192 MATPVTGINLMAPSFSY 142
           MAT  +GIN   P  SY
Sbjct: 284 MATQTSGINASLPPVSY 300


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,450
Number of Sequences: 438
Number of extensions: 4392
Number of successful extensions: 39
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)