Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_L06
         (528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical...   176   7e-45
U61953-10|AAK82911.1|  613|Caenorhabditis elegans Hypothetical p...    30   0.89 
U61953-9|AAK82910.1|  748|Caenorhabditis elegans Hypothetical pr...    30   0.89 
U61953-8|AAC48078.1|  746|Caenorhabditis elegans Hypothetical pr...    30   0.89 
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AC024761-10|AAP13759.1|  501|Caenorhabditis elegans Cop-9 signal...    29   2.1  
AF003135-8|AAK18984.1|  235|Caenorhabditis elegans Hypothetical ...    28   3.6  
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    27   6.3  
U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily ass...    27   8.3  
AF038609-2|AAK29794.1|  226|Caenorhabditis elegans Hypothetical ...    27   8.3  
AF038609-1|AAO61425.1|  234|Caenorhabditis elegans Hypothetical ...    27   8.3  

>AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical
           protein Y105E8A.16 protein.
          Length = 117

 Score =  176 bits (429), Expect = 7e-45
 Identities = 78/101 (77%), Positives = 95/101 (94%)
 Frame = +2

Query: 176 HRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTW 355
           HRIR+TLTS+NV+ LEKVCA LI+GAK + L VKGP+RMPTK+LRITTRKTPCGEGSKTW
Sbjct: 17  HRIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMPTKVLRITTRKTPCGEGSKTW 76

Query: 356 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 478
           DRFQMRIHKR+I+LH+P+E+++QITSI+IEPGV++EVT AD
Sbjct: 77  DRFQMRIHKRLINLHAPAEVLRQITSISIEPGVDIEVTRAD 117


>U61953-10|AAK82911.1|  613|Caenorhabditis elegans Hypothetical
           protein R08C7.10c protein.
          Length = 613

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 525 FSSFFQKYFIGGSAYASAMVTSTSTPGSMLIEVICFTIS 409
           F+S+ +K  +GG   +  M   + TP S++IE + F  S
Sbjct: 349 FNSYIEKQEVGGQKVSFDMRKESLTPSSLIIEALVFICS 387


>U61953-9|AAK82910.1|  748|Caenorhabditis elegans Hypothetical
           protein R08C7.10b protein.
          Length = 748

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 525 FSSFFQKYFIGGSAYASAMVTSTSTPGSMLIEVICFTIS 409
           F+S+ +K  +GG   +  M   + TP S++IE + F  S
Sbjct: 351 FNSYIEKQEVGGQKVSFDMRKESLTPSSLIIEALVFICS 389


>U61953-8|AAC48078.1|  746|Caenorhabditis elegans Hypothetical
           protein R08C7.10a protein.
          Length = 746

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 525 FSSFFQKYFIGGSAYASAMVTSTSTPGSMLIEVICFTIS 409
           F+S+ +K  +GG   +  M   + TP S++IE + F  S
Sbjct: 349 FNSYIEKQEVGGQKVSFDMRKESLTPSSLIIEALVFICS 387


>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
           protein H03E18.1 protein.
          Length = 1147

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 218 LEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGE 340
           +E V A  + G KK+  + K   + PTK    +T++ P  E
Sbjct: 359 VELVTAKTVEGEKKETKKPKSTTKKPTKTAAASTKRPPTTE 399


>AC024761-10|AAP13759.1|  501|Caenorhabditis elegans Cop-9
           signalosome subunit protein 3 protein.
          Length = 501

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -1

Query: 522 SSFFQKYFIGGSAYASAMVTSTSTPGSMLIEVICFTISE 406
           ++FF K F G S+ +SA  +S    GSM  E +C  I+E
Sbjct: 2   TTFFNKLFTGASSSSSAAASSGMDLGSM--ESLCAAINE 38


>AF003135-8|AAK18984.1|  235|Caenorhabditis elegans Hypothetical
           protein W03F11.1 protein.
          Length = 235

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 136 QRHRETPGRGLPYPPHQDHSYFSQCA 213
           Q HR  PG  +PYP   DH+ F +C+
Sbjct: 84  QGHRCYPGTRIPYP--HDHTMFLECS 107


>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
            protein F28B3.1 protein.
          Length = 1539

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 149  KPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKK 259
            + +A+ SP HRI   +TS+N       C+ L+  A++
Sbjct: 943  RSRAQSSPDHRILTLVTSKNAEQDTATCSTLLKRAER 979


>Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical protein
            F55G11.9 protein.
          Length = 1431

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 513  FQKYFIGGSAYASAMVTSTSTPGSMLIEVICFT 415
            F  YF+    Y +A + +T T GS+L+ V C T
Sbjct: 958  FLLYFVS-LVYLTASLINTPTKGSLLLYVFCLT 989


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
 Frame = +1

Query: 94  PEFNKQHGSRCSVRQRHRETPGRGL-PYPPHQDHSYF 201
           P  +  H  R   R  H      G  P+PPH  H +F
Sbjct: 399 PPHHHHHDGRSPSRHGHHHHHHHGCRPFPPHHGHHHF 435


>U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 158 protein.
          Length = 1003

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 216 ERTL-REVRVILMRWIGETSAWGFSMSLPDTTA 121
           ERTL  E R ++MR + + S  G S+SLP   A
Sbjct: 838 ERTLLMEERTMMMRDLQKVSGGGMSLSLPPANA 870


>AF038609-2|AAK29794.1|  226|Caenorhabditis elegans Hypothetical
           protein C54E4.2a protein.
          Length = 226

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 113 MAAAVVSGKDIEKPQAEVSPIH 178
           ++AA +S +D+EKP +   P+H
Sbjct: 14  ISAAYISSEDLEKPSSADKPVH 35


>AF038609-1|AAO61425.1|  234|Caenorhabditis elegans Hypothetical
           protein C54E4.2b protein.
          Length = 234

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 113 MAAAVVSGKDIEKPQAEVSPIH 178
           ++AA +S +D+EKP +   P+H
Sbjct: 14  ISAAYISSEDLEKPSSADKPVH 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,810,092
Number of Sequences: 27780
Number of extensions: 284590
Number of successful extensions: 677
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)