Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_L05
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc...    60   2e-10
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    29   0.31 
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   0.94 
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    27   0.94 
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   5.0  
SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   6.7  

>SPCC1442.08c |cox12||cytochrome c oxidase subunit
           VIb|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 83

 Score = 59.7 bits (138), Expect = 2e-10
 Identities = 23/44 (52%), Positives = 28/44 (63%)
 Frame = +1

Query: 172 CQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAGRI 303
           C K +GE + PC  F   Y+SLCP EWV++WD QR  GTF   I
Sbjct: 40  CIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTFPAPI 83



 Score = 41.5 bits (93), Expect = 5e-05
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = +3

Query: 111 RFPNQNQTRHCYQSYVDFHR 170
           RFPN NQT+HC+QSY+D+ R
Sbjct: 20  RFPNTNQTKHCFQSYIDYFR 39


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 29.1 bits (62), Expect = 0.31
 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +2

Query: 71  QIARRPQNSTFRPTVP*PKSDEALLP-KLRGLPPXARKFAAKNTNHATISRECTGLSAPM 247
           + ARR  +S    + P  K  ++ LP +   +P  +++ +  +T+ AT++     +S+  
Sbjct: 276 EAARRTYSSISSSSSPFKKKTQSHLPNRTTEVPSISKQLSKSSTSIATVAPSLASVSSVT 335

Query: 248 SGSTSGTTSAPKAPS 292
              +    SAP+A S
Sbjct: 336 KSPSPTPQSAPRAQS 350


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 27.5 bits (58), Expect = 0.94
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 88   SKQHLSTH-GSLT-KIRRGTATKVTWTSTXCQKVRGEKYEP 204
            SK+ +  H GS++ + RRG  T+  WT+T        K+EP
Sbjct: 1192 SKELVELHNGSMSCQSRRGVGTRFMWTATFTMDKTPLKFEP 1232


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 27.5 bits (58), Expect = 0.94
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 140 LLPKLRGLPPXARKFAAKNTNHATISRECTGLSAPMSGST-SGTTSAPKAPSPVGFRS*T 316
           LLP+ RG PP  R+   +N     I+   T  S   S +T    +S+P + SP+   S  
Sbjct: 423 LLPRKRGRPPKKRQ---ENAEIRNITPGLTDSSVHSSSATPQSESSSPNSVSPLLPSSDR 479

Query: 317 FPML 328
            P+L
Sbjct: 480 LPLL 483


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +3

Query: 72  KSPADLKTAPFDPRFPNQNQTRHCYQSYVDFHR-LP--ESSRRKIRTMLLFQ-ESVQVSL 239
           K    L+T P    F      R C+ S V F+R LP    S   + T+ L + ES ++SL
Sbjct: 202 KETTSLETLPTSIYFDCSISVRDCHDSLVTFNRVLPLYTISHSNLSTLTLVKPESKEISL 261


>SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 72

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 268 CPTCRPTHWGRETCTL 221
           CPT  PT W   +CT+
Sbjct: 3   CPTHGPTTWNPHSCTV 18


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,602,136
Number of Sequences: 5004
Number of extensions: 32058
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)