Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_L05
(436 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50253| Best HMM Match : HYR (HMM E-Value=2.6e-20) 28 2.9
SB_41787| Best HMM Match : Frizzled (HMM E-Value=0) 28 3.8
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 3.8
SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8) 27 5.0
SB_25029| Best HMM Match : Collagen (HMM E-Value=0.38) 27 6.7
SB_24894| Best HMM Match : TSP_1 (HMM E-Value=1.8e-10) 27 6.7
SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_17372| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_44697| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19) 27 8.8
>SB_50253| Best HMM Match : HYR (HMM E-Value=2.6e-20)
Length = 525
Score = 28.3 bits (60), Expect = 2.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 283 LRRAGCPTCRPTHWGRETC 227
++R GCPT P H G TC
Sbjct: 157 IKRKGCPTLIPPHRGTATC 175
>SB_41787| Best HMM Match : Frizzled (HMM E-Value=0)
Length = 542
Score = 27.9 bits (59), Expect = 3.8
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +1
Query: 205 CYYFKRVYRSLCPNEWVDKWDNQR 276
C Y+++ R L N W++ W Q+
Sbjct: 443 CLYYEQSNRELWDNSWIEGWKRQK 466
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 75 SPADLKTAPFDPRFPNQNQTRHCYQSYVDFHRLPESSR 188
+P +TAP P+ P + + C SYV F + + R
Sbjct: 3919 TPEMQETAPVSPQTPIEYKCNKCSNSYVSFSEMKKHMR 3956
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 78 PADLKTAPFDPRFPNQNQTRHCYQSYVDFHRL 173
P +TAP P+ P + + C SYV F +
Sbjct: 3290 PEIQRTAPVSPQTPIEYKCNKCRNSYVSFSEM 3321
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 75 SPADLKTAPFDPRFPNQNQTRHCYQSYVDFHRL 173
+P +TAP P+ P + + C SYV F +
Sbjct: 3499 TPEMQETAPVSPQTPIEYKCNKCRNSYVSFSEM 3531
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 78 PADLKTAPFDPRFPNQNQTRHCYQSYVDFHRL 173
P +TAP P+ P + + C SYV F +
Sbjct: 3710 PEIQRTAPVSPQTPIEYKCNKCSNSYVSFSEM 3741
>SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8)
Length = 336
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 79 PPTSKQHLSTHGSLTKIRRGTATKVTWTSTXCQKVRGE 192
PP +K L H + +I+ TAT TS+ C +VR E
Sbjct: 50 PPVTKAPLDQHAHIVQIKLITAT----TSSRCSRVRCE 83
>SB_25029| Best HMM Match : Collagen (HMM E-Value=0.38)
Length = 388
Score = 27.1 bits (57), Expect = 6.7
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 122 PKSDEALLPKLRGLPPXARKFAAKNTNHATISRE 223
P SD+A + +R LPP AR T+ TI E
Sbjct: 204 PPSDDAWINLIRKLPPEARGRIRSATSQLTIIEE 237
>SB_24894| Best HMM Match : TSP_1 (HMM E-Value=1.8e-10)
Length = 171
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -1
Query: 310 GSKSYRRRCLRRAGCPTCRPTHWG 239
G K RRR R C T +HWG
Sbjct: 55 GHKHRRRRYCSRVNCQTSNWSHWG 78
>SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 821
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -1
Query: 322 RERLG-SKSYRRRCLRRAGCPTCRPTH 245
R RLG K RR L R+GC T P H
Sbjct: 710 RSRLGVPKGSRRGSLERSGCSTPDPEH 736
>SB_17372| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 26.6 bits (56), Expect = 8.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 191 KNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 298
K+ N T T +S P+S S S +TS P SPV
Sbjct: 108 KSCNTCTNGGSETTMSPPVSPSASVSTSRPSTLSPV 143
>SB_44697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 218 RECTGLSAPMSGSTSGTTSAPKAPSPV 298
R+ T +++ SGS+S T+SAP PS +
Sbjct: 251 RKQTLITSRASGSSSSTSSAPLTPSSI 277
>SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19)
Length = 1026
Score = 26.6 bits (56), Expect = 8.8
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Frame = +2
Query: 161 LPPXARKFAAKN----TNHATISRECTGLSAPMSGST 259
+PP AR A N T+ A+I+ + T L+AP SGS+
Sbjct: 83 VPPRARCTVAPNRCRSTSAASITSDLTILTAPQSGSS 119
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,100,467
Number of Sequences: 59808
Number of extensions: 243853
Number of successful extensions: 662
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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