Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_L04
         (778 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44862| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_38403| Best HMM Match : PP2C (HMM E-Value=8.5e-35)                  28   9.7  

>SB_44862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 28/88 (31%), Positives = 34/88 (38%)
 Frame = +1

Query: 127 DDDLEVNLPDYGEDPADLQLLQDVGKRACVRRGGNCDHRPGDCCHSSSCRCNLWGSNCRC 306
           D  LE    DYG      Q    +GKR   R G +   +      + S      G N  C
Sbjct: 43  DKALEKYQRDYGRYQQRRQK-SSIGKRKVTREGPS-QSKTSPTLTTRSNSTTRPGQNNPC 100

Query: 307 QRMGLFQKWG*ETTTGAPLKRRPTPASR 390
            R GL        TT +P KRR TP+ R
Sbjct: 101 SRCGLLSC----PTTTSPEKRRKTPSWR 124


>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 345 NDRSSSEAATNSSQPT*PPLHRKPQHSPTQNGP 443
           N+  S    TN++ P  PP ++ P   P  NGP
Sbjct: 352 NNPPSPPPPTNNTPPPPPPTNKPPPPPPPTNGP 384


>SB_38403| Best HMM Match : PP2C (HMM E-Value=8.5e-35)
          Length = 916

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +1

Query: 160 GEDPADLQLLQDVGKRACVRRGGNCDHRPGDCCHSSSCRC 279
           G  P   Q  QDV +  C    G CDH   D   S +C C
Sbjct: 823 GWRPQGDQCTQDVNE--CNSNNGGCDHLCNDTVGSFNCSC 860


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,173,095
Number of Sequences: 59808
Number of extensions: 399495
Number of successful extensions: 3202
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3201
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)