Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_L03
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    27   1.4  
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     27   1.8  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   5.6  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   5.6  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   5.6  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   7.4  
SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit L8|S...    25   7.4  
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1...    24   9.8  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    24   9.8  

>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 123 VIKRNIIVALALSGVAGFTFKQLIGNER 206
           V  R IIV  A   VA FTF+QL G  +
Sbjct: 311 VFGRKIIVPKASGNVAWFTFEQLCGEPK 338


>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +3

Query: 204 RKRKYAEFYRTYDAEKE-FEEMRKK 275
           RK  Y ++Y T+D  KE F+E++K+
Sbjct: 375 RKLGYTDYYDTFDGFKETFDELKKQ 399


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 278 SIPILLNMNYHSVVLLLFCCE*CY 349
           S+ +    +YHS +  + CC  CY
Sbjct: 447 SLLVQYTKDYHSEIAQMLCCSLCY 470


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +2

Query: 11  MXVSLGIFNFSKIXISHGWRKCSIDSEQASXA--XSPQRRHQT 133
           + V  G   F     +H WRK S DSE  S     SP++  +T
Sbjct: 166 LTVGSGASYFHNCLQAHNWRKYSEDSESMSRILFISPEQTGRT 208


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 194 NELLEGKTSDARESQSNNNVTFDDGVEET 108
           NE+L    S++  ++S N  T D G  ET
Sbjct: 488 NEVLSRPNSNSNSAESRNGETDDSGESET 516


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 219 AEFYRTYDAEKEFEEMRKKGLFQSC 293
           A+F+R Y+A K F  ++K  +   C
Sbjct: 856 AKFWRAYNARKTFRGLKKSVIALQC 880


>SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 207

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = +3

Query: 114 LNAVIKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKKG 278
           L  + ++NI   L         F QL+  E++ ++A     ++ EK  ++  K+G
Sbjct: 144 LTPITRKNIHKVLLFRKNGKAEFDQLVQKEKESEHARLKEDHEDEKTVKKDWKRG 198


>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 455

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +3

Query: 240 DAEKEFEEMRKKGL 281
           +A KEF+E+R+KGL
Sbjct: 25  EAVKEFDELRQKGL 38


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 281 IPILLNMNYHSVVLLLFCCE*CYNLNKKLEGE 376
           +P+L   N     +  + CE  YN+ K  +GE
Sbjct: 89  LPVLYCFNDSDSKIRYYACESMYNIGKVAKGE 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,160,314
Number of Sequences: 5004
Number of extensions: 17300
Number of successful extensions: 63
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)