Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_L03
         (462 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51698| Best HMM Match : COX6C (HMM E-Value=1e-07)                   53   1e-07
SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)                    27   10.0 
SB_28897| Best HMM Match : Trypsin (HMM E-Value=0)                     27   10.0 

>SB_51698| Best HMM Match : COX6C (HMM E-Value=1e-07)
          Length = 187

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 26/60 (43%), Positives = 38/60 (63%)
 Frame = +3

Query: 87  ASKPQXRGLLNAVIKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEM 266
           A  PQ RG++   +K++I+ A     VAG  +K L  +  K+KYA+FY+ YDAEK  +EM
Sbjct: 121 AMAPQLRGIVVRTLKKDILHASIAGIVAGCAWKFLYADPLKKKYADFYKNYDAEKVAKEM 180


>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +3

Query: 57  AMAGXSAVSTASKPQXRGLLNAVIKRNIIVALALSG-VAGFTFKQLIGNERKRKYAEFYR 233
           AM   + +S   + + R LL+   K N++ A   S  V     ++L G+ERK++  E YR
Sbjct: 4   AMKEATEISETLEQEERNLLSVAYK-NVVGAKRSSWRVISSIEQKLEGSERKKQNTETYR 62

Query: 234 TYDAEKEFEEM 266
               E E  E+
Sbjct: 63  -QTIENELNEV 72


>SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)
          Length = 591

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 201 ERKRKYAEFYRTYDAEKEFEEMRKK 275
           ERKRK A+  +  +A KE EE RK+
Sbjct: 371 ERKRKEADDRQREEARKEEEEKRKR 395


>SB_28897| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 974

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 276 PSCASPQIPFQHHRFCRIQHT 214
           P     Q+PF  HR C++ HT
Sbjct: 873 PVLKQVQLPFVSHRVCQVNHT 893


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,600,978
Number of Sequences: 59808
Number of extensions: 129371
Number of successful extensions: 399
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)