Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_L02
         (659 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.1  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   6.8  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 657  RVLDHILEFLQLWD 616
            R + H+L+FL+ W+
Sbjct: 1498 RFIKHVLQFLEKWN 1511



 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 391  LAWDRLRSEWPKNS*SH 341
            L W++   +WP+N+  H
Sbjct: 2269 LFWNKDHCDWPENTECH 2285


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +3

Query: 96  GAGAGYPSDNRTRAGEATGRASLRDIRAGPDRAERLRRQELQ 221
           GAGA        +AG+        D RA   +  ++  QEL+
Sbjct: 122 GAGAAASGSAAAQAGQPDNAIEHSDYRAKLAQIRQIYHQELE 163


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,306
Number of Sequences: 336
Number of extensions: 2845
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)