Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_L02
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 27 2.4
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma... 27 2.4
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 27 3.2
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 27 3.2
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 26 4.2
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 26 5.5
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera... 25 7.3
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.3
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 25 9.7
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 9.7
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 25 9.7
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 25 9.7
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Frame = +1
Query: 202 YDDKNYKLTEDPNMKNPLITNH----SPYGYVLKIMNSIDSQN 318
+ + +LT+ PN L+T+H S Y Y LK+ DS+N
Sbjct: 33 FSKREAQLTDTPNK---LLTDHDQSASDYAYALKLQQLFDSEN 72
>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 27.1 bits (57), Expect = 2.4
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 409 HLHSIEDLGGKKHAVRL-LEYVPGELLKNCPLSEALLYQLGEFVANLDNKLQN 564
HL +E + V+L L+Y L K ++ LL Q E ++NL +KLQN
Sbjct: 272 HLSRLEKIRELLTFVQLELKYYVEPLKKELQETKTLLAQKEEEISNLKDKLQN 324
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 61 LEGNMTDAKLLLEPGQVIRPIIEHEQVKLLAERLYGISVLDLT--ELNGYDDKNYKLTED 234
+E +M D LLL P IEH ++L+ E + L T EL +D ++ + ++
Sbjct: 88 MEPSMADYSLLLTQPVFTMPSIEHNTIQLVFEEFQFDAYLPCTPAELIPWDHGSFTMNQE 147
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 226 TEDPNMKNPLITNHSPYGYVLKIMNSIDSQNVGVVEAQNEIMN 354
T+ +++ L+T S YVLK + + +NV V Q E +N
Sbjct: 50 TQYAGLRDSLVTYKSENSYVLKALLNAKIENVKPVGVQTENIN 92
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = -3
Query: 609 EHPHVLSADQTGVVEVLQFVIQISDKFS--ELIQESFGQGTVLQELSRHVLQQSYGVFLA 436
E H+ V+ V++ + K+ E + + V ++R V+Q+ F+A
Sbjct: 930 EQLHIQKMVSKSVMPVVERLRSQGKKYQLVEAVVDDLIGAKVAPVIARQVMQRVVKKFIA 989
Query: 435 SKVLDGVQVTEYIPYWL 385
+V++ ++ EY+ + L
Sbjct: 990 GQVVEATELLEYLSFSL 1006
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.8 bits (54), Expect = 5.5
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +2
Query: 551 TNCRTSTTPVW 583
TNC+T TTP+W
Sbjct: 636 TNCQTRTTPLW 646
>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 386 SQYGIYSVTCTPSRTLEARNTP*DCWSTCRESS*RTVPC 502
S+ G+ +TCT S L P C+S SS R+ C
Sbjct: 218 SKDGLLCITCTDSAVLAGNAYPEKCFSNYGGSSLRSNFC 256
>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 168
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 403 FGHLHSIEDLGGKKHAVRLLEYVPGE 480
+G LH I++LGG + + L+E V +
Sbjct: 71 YGLLHDIKELGGTEEDLELIEDVESD 96
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 466 YVPGELLKNCPLSEALLYQLGEFVANLDNKLQNFNHSGLVSR 591
++ G LK L E + Y +G+ + NKL + + VSR
Sbjct: 449 HISGRTLKEISLDEPIRYAMGDRIELWLNKLLCLDAASYVSR 490
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 394 RNIFGHLHSIEDLGGKKHAVRLLEYVPGELLKNCPLS 504
RN HL S +D G V + Y+P + P+S
Sbjct: 1826 RNGISHLTSQDDFDGISKIVNWISYIPDKRNNPVPIS 1862
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 536 SLIWITNCRTSTTPVWSADST 598
S+ + NC T+ TP+W D +
Sbjct: 168 SVTFCQNCATTNTPLWRRDES 188
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 536 TNSPS*YRRASDRGQFFKSSPGTYSSSLTACFLPPRSSME 417
T+S RR S G F + SS+ T+ +LP S+ E
Sbjct: 183 TSSNGTSRRVSGLGSFMAQNSSETSSNRTSAYLPGSSTDE 222
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,480,384
Number of Sequences: 5004
Number of extensions: 48266
Number of successful extensions: 169
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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