Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_L02
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0333 - 24481029-24481109,24481185-24481253,24481785-244818...    31   0.61 
02_01_0247 - 1632425-1632646,1632873-1632958,1633209-1633332,163...    30   1.9  
08_02_0098 - 12324664-12324822,12325430-12325543,12325649-123259...    29   3.3  
03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779     29   3.3  
02_04_0036 + 19097693-19098106                                         29   4.3  
11_06_0347 + 22555087-22555943,22556638-22558783                       28   5.7  
11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365...    28   5.7  

>04_04_0333 -
           24481029-24481109,24481185-24481253,24481785-24481853,
           24481923-24481944,24482302-24482393,24482688-24482803,
           24482899-24483042,24483287-24483476
          Length = 260

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +1

Query: 100 PGQVIRPIIEHEQVKLLAERLYGISVLDLTELN--GYDDKNYKLTEDPNMKNPLITNHSP 273
           PG +   ++E   VK+   RL  +SVLD   L+   YD  + K  E   + +PL  N +P
Sbjct: 111 PGMLDHIMVETTGVKVALNRLAVVSVLDAHTLSVMPYDPSSMKSIEHAIISSPLGINPTP 170

Query: 274 YG 279
            G
Sbjct: 171 DG 172


>02_01_0247 -
           1632425-1632646,1632873-1632958,1633209-1633332,
           1633622-1633729,1634297-1634378,1634718-1634770,
           1634866-1634949,1635092-1635249,1635326-1635805,
           1636340-1636709
          Length = 588

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -2

Query: 532 ILRADTGELRTGDSSSRALPARTPAV-LRRVSCLQGPRWSAGDRIYSVLAWDRLRSEWP 359
           ILR+  GEL+    SS  L A    + +R  S  +  +WS G+R    L W RL +  P
Sbjct: 120 ILRSGMGELKDEPVSSAQLGAFFAGMTIRANSFPEATQWSEGERRAMSLFWPRLVNVLP 178


>08_02_0098 -
           12324664-12324822,12325430-12325543,12325649-12325921,
           12326124-12326354,12326444-12326594,12326680-12326759,
           12326839-12326913,12326992-12327093,12328000-12328121,
           12329726-12329791,12330158-12330201,12330850-12330898,
           12330967-12331087,12334631-12334735
          Length = 563

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
 Frame = +1

Query: 166 GISVLDLTELNGYDDKNYKLTEDPNMKNPLITNHSPYGYVLKIMNSIDSQNVGVVEAQ-- 339
           G+  L+ T  NG  +K Y    +P +  P++T  S     + I++S  S     +E Q  
Sbjct: 92  GLCQLEFT--NGQVEKRYLSRTEPKLPVPIVTCESALWRGVSILDSDSSGITMELELQWD 149

Query: 340 ---NEIMNFLATRSVTCPKPVRNI 402
              N +++   T  ++ P  V+NI
Sbjct: 150 GNPNIVLDIQTTLGISLPVQVKNI 173


>03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779
          Length = 704

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
 Frame = +1

Query: 373 VTCPKPVRNIFGHLHSIEDLGGKKHAVRLLEYVPGELLKNCPLSEALLYQLGEFV-ANLD 549
           + C KP RNI+G L ++ DL G++ AV L       +L+ C L     + +G  V    D
Sbjct: 280 IKCEKPNRNIYGFLATV-DLDGRR-AVSL--GTSNIMLRGCELKNT-AWAIGVAVYTGRD 334

Query: 550 NKLQNFNHSGLVSRQ 594
            K+   N+SG  S++
Sbjct: 335 TKVM-LNNSGAPSKR 348


>02_04_0036 + 19097693-19098106
          Length = 137

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +1

Query: 385 KPVRNIFG--HLHSIEDLGGKKHAVRLLEYVPGELLKNCPLSEALLYQLG 528
           +PV  +F   H HS+   GG++ A RL+ +  G   +     +A   QLG
Sbjct: 68  RPVEGLFRYCHRHSVSAAGGERRAFRLVRFA-GAASEEIRRGDATFQQLG 116


>11_06_0347 + 22555087-22555943,22556638-22558783
          Length = 1000

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 436 LQGPRWSAG-DRIYSVLAWDRLRSEWPKNS 350
           LQG R+    D I+SV AW+ +R   PKN+
Sbjct: 282 LQGKRYHILIDDIWSVSAWESIRDSLPKNN 311


>11_01_0471 -
           3648871-3649078,3649841-3649926,3650111-3650155,
           3650306-3650815,3651700-3653757
          Length = 968

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 488 RTVPCPKLSCISSENLSLIWITNCRTSTT 574
           R V C +L C + +++  +W+ +CR S T
Sbjct: 620 RIVLCVRLLCNTGDDVRKVWLQSCRQSFT 648


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,537,780
Number of Sequences: 37544
Number of extensions: 333872
Number of successful extensions: 1260
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)