Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_L02
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39917| Best HMM Match : APH (HMM E-Value=0.00074)                   90   2e-18
SB_13167| Best HMM Match : APH (HMM E-Value=1e-04)                     69   3e-12
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)              67   1e-11
SB_13696| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_39188| Best HMM Match : Ion_trans (HMM E-Value=4.9e-20)             29   2.5  
SB_4812| Best HMM Match : Sulfatase (HMM E-Value=0)                    29   2.5  
SB_7922| Best HMM Match : SMC_C (HMM E-Value=1.5e-08)                  29   4.4  
SB_51115| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_39917| Best HMM Match : APH (HMM E-Value=0.00074)
          Length = 407

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 63/199 (31%), Positives = 101/199 (50%), Gaps = 10/199 (5%)
 Frame = +1

Query: 88  LLLEPGQVIRPIIEHEQVKLLAERLYGIS-VLDLTELNGYDDKNYKLTEDPNMKNPLITN 264
           L++   Q  RP    E  K LA+ LY  + VL++ E   + D+N+ +      +N    N
Sbjct: 44  LIMSKRQPRRPNASLETAKTLAKDLYNFTDVLEMREFKSFFDRNFYIRGQVRTENNGNPN 103

Query: 265 HSPYGYVLKIMNSIDSQNVGVVEAQNEIMNFLATRSVTCPK--PVRN--IFG--HLHSIE 426
             P  +VLKI NS+DS+N  V +A+N++M  L  R   CP+  P RN  +    HL + +
Sbjct: 104 -KPQEFVLKIHNSLDSENEEVRDAENQLMRMLRDRGFPCPEIIPTRNGQLMEKIHLPASD 162

Query: 427 DLGGKKHAVRLLEYVPGELLKNCPLSEA---LLYQLGEFVANLDNKLQNFNHSGLVSRQH 597
                   VRLL +V G+ L +   S+    L+Y LG+F+ +    +++F+ S L  RQH
Sbjct: 163 GQNADGCVVRLLSFVYGQELDSLDKSDVTPELMYTLGKFIGDASKAMKDFSSSALRRRQH 222

Query: 598 MWMLSMVPXLEKFKYVIKD 654
            W +     +++    IKD
Sbjct: 223 TWDIKNFLHIQEQLASIKD 241


>SB_13167| Best HMM Match : APH (HMM E-Value=1e-04)
          Length = 374

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 14/188 (7%)
 Frame = +1

Query: 115 RPIIEHEQVKLLAERLYGIS-VLDLTELNGYDDKNYKLTEDPNMKNPLITNHSPYG-YVL 288
           RP +   +   LA  L+ I+ + ++ EL    D+N+ +           T     G +VL
Sbjct: 8   RPEVSCSEAGHLARSLFCITPITEVKELISTSDRNFFI-------EGFSTAFQASGKFVL 60

Query: 289 KIMNSIDSQNVGVVEAQNEIMNFLATRSVTCPKPVRN------------IFGHLHSIEDL 432
           KI+NS DS N  ++ A+N  +++L  R   CP  ++             + G +      
Sbjct: 61  KILNSSDSSNEELIYAENAAIDYLRERGYPCPMVLKAWNDKRLAKADLPVRGSIKGNGKD 120

Query: 433 GGKKHAVRLLEYVPGELLKNCPLSEALLYQLGEFVANLDNKLQNFNHSGLVSRQHMWMLS 612
           G ++  +RLLE VPGE L +   +  +LYQ+GEF+ ++   LQ F+H  + +R   + L 
Sbjct: 121 GTERCIIRLLELVPGETLASISTTSKMLYQVGEFIGSVSGSLQGFSHLAIDARYDRYDLK 180

Query: 613 MVPXLEKF 636
               LE +
Sbjct: 181 NFQDLEPY 188


>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 27/181 (14%)
 Frame = +1

Query: 115 RPIIEHEQVKLLAERLYGI-----SVLDLTELNGYDDKNYKLTEDPNMKNPLITNHSPYG 279
           RP +  EQ   L++ +YG+     SV  + EL  YDD+N+ L     ++N      +  G
Sbjct: 28  RPKVTCEQAIHLSKNIYGVHVPSTSVSLVKELISYDDRNFYL--QGFIQNEEQEPANLRG 85

Query: 280 YVLKIMNSIDSQNVGVVEAQNEIMNFLATRSVTCPKPVRNIFGHLHSI------------ 423
           ++LK+ N   S++  +++  ++++ +L+ R +TCP P  +  G LH++            
Sbjct: 86  FLLKVSNPAFSKSQSILKGNSDLLLYLSKRDITCPVPYSSRNGELHTMCNFSGQLGNATA 145

Query: 424 ----------EDLGGKKHAVRLLEYVPGELLKNCPLSEALLYQLGEFVANLDNKLQNFNH 573
                     ED      AVRL  YV G LL+   L+E +LY LG  VA++   +++F++
Sbjct: 146 CGSYKVLSKDEDNADGACAVRLFSYVSGSLLEKVALTEDVLYDLGASVASMHKAMKDFSN 205

Query: 574 S 576
           +
Sbjct: 206 T 206


>SB_13696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 676

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 199 GYDDKNYK-LTEDPNMKNPLITNHSPYGYVLKIMNSIDSQNVGVVEA 336
           G+ DK  + LT DP   +  ++  SP  ++  +++ I  QNV +VE+
Sbjct: 262 GFGDKAIEALTRDPKESDTNVSRASPDSHLQTVISEIREQNVELVES 308


>SB_39188| Best HMM Match : Ion_trans (HMM E-Value=4.9e-20)
          Length = 551

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 511 LLYQLGEFVANLDNKLQNFNHSGLVSRQHMWM 606
           LL  +   + NLD    ++NH     +QHMW+
Sbjct: 263 LLGSMASIITNLDAMRASYNHHLTAIKQHMWL 294


>SB_4812| Best HMM Match : Sulfatase (HMM E-Value=0)
          Length = 1040

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
 Frame = +1

Query: 217 YKLTEDPNMKNPLITNHSPYGYVLKIMN-SIDSQNVGVVEAQNEI-MNFLATRSVTC-PK 387
           + LT DP+  NPL+     Y  ++K +N +I      + +  N++  N   T+   C P 
Sbjct: 400 FDLTADPSESNPLVPTKPHYNEIMKHINKAIKHHQDTIAQVPNQLSKNICLTKMEACRPC 459

Query: 388 PVRNIFGHLHSIEDLGGKKHAVRLLEYVPGEL 483
               +F  L     L   +    +L ++  +L
Sbjct: 460 LSCYVFALLVIFSSLASSQKKPNILIFIVDDL 491


>SB_7922| Best HMM Match : SMC_C (HMM E-Value=1.5e-08)
          Length = 493

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +1

Query: 427 DLGGKKHAVRLLEYVPGELLKNCPLSEALLYQLGEFVANLDNKLQNFNHSG 579
           D+G      + L+ V GELLKNC +   +L +L +  A +D+ +   +H G
Sbjct: 370 DVGRDVKNQQQLDDVRGELLKNCEV--LVLAELDDLRAPMDDNMVFMHHPG 418


>SB_51115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1088

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/33 (39%), Positives = 25/33 (75%)
 Frame = +1

Query: 244 KNPLITNHSPYGYVLKIMNSIDSQNVGVVEAQN 342
           ++P+ TN+S YG+VLK+  +   +++GVV A++
Sbjct: 63  RSPIETNYSIYGHVLKLTPA--QKDLGVVVARD 93


>SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -2

Query: 511 ELRTGDSSSRALPARTPAVLRRVSCLQGPRWSAGDRIYSVLAWDRLRS 368
           EL TG  SSR    RTPA +    C++ P  +        +  DRL++
Sbjct: 235 ELVTGGDSSRKWWRRTPARISVAKCMEHPWLTTKKETEKRIKTDRLKA 282


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,057,799
Number of Sequences: 59808
Number of extensions: 378401
Number of successful extensions: 1810
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1806
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)