Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_K23
(597 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 39 0.003
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 36 0.032
11_06_0653 + 25911162-25911272,25911648-25911694,25912877-259133... 36 0.032
12_02_0626 - 21344530-21344986,21346132-21346469,21347300-213473... 28 6.5
11_06_0656 + 25926192-25926289,25927530-25927659,25928248-259282... 28 6.5
08_01_0022 - 163512-163817,165963-166032,166074-166151,166399-16... 27 8.6
05_07_0196 + 28352320-28352522,28352679-28352808,28353774-283538... 27 8.6
04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785... 27 8.6
01_04_0143 + 16689471-16689498,16689687-16689818,16689974-166900... 27 8.6
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +3
Query: 414 LASLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTXRGGKM 587
L S+ SY Y +YF+ +GFAK F++ SD+ + LIK+ RGG++
Sbjct: 130 LCSVEYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRV 187
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 35.5 bits (78), Expect = 0.032
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +3
Query: 438 SYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTXRGGKM 587
SY Y +YF+ +GFAK F++ SD+ + L+K+ RGG++
Sbjct: 106 SYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNMRGGRV 155
>11_06_0653 +
25911162-25911272,25911648-25911694,25912877-25913355,
25914089-25914249,25914324-25914519,25914745-25914807,
25914898-25915047,25915148-25915494
Length = 517
Score = 35.5 bits (78), Expect = 0.032
Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Frame = +3
Query: 270 LALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNHVVANELKALASLYLKRSYHY 449
L LGV+A ++ Q + +G + ++ Y + N + + L + + H
Sbjct: 181 LKLGVMAADERISQRIQEGITESFAVKDVRGYSTKKNLNPSPCDPVYKLNKIAMNGDRHK 240
Query: 450 LLSAS-------YFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTXRGG 581
LL + + + Y + E K+ K+SD WE I + T R G
Sbjct: 241 LLEKNGIKTVGDFLSFYDRSPEDLRKILGKISDQDWETIISHAQKCTPRPG 291
>12_02_0626 -
21344530-21344986,21346132-21346469,21347300-21347338,
21347572-21347629,21349854-21350136,21350404-21350766,
21350768-21350840
Length = 536
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +2
Query: 260 RCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLRPIQGQPRCSERTEG 412
+ ++G G +GRG ++ + PR + +A +R L +G +C + G
Sbjct: 87 KAVTGGGRSGRGLVVCCQMAPRRGGGERRSAQRRRLERRKGGDQCDDELSG 137
>11_06_0656 +
25926192-25926289,25927530-25927659,25928248-25928294,
25929274-25929388,25929504-25929753,25930079-25930239,
25930372-25930567,25930672-25930836,25930918-25931070,
25931160-25931248,25931385-25931423,25931460-25931681,
25933503-25934165
Length = 775
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/98 (18%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Frame = +3
Query: 276 LGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNHVVANELKALASLYLKRSYHYLL 455
LGV+A ++ + + +G + ++ Y + N + + L+ + H LL
Sbjct: 184 LGVMAADERISERIQEGITESFAVKDVRGYLTKKNPNPSPRDAVYKLSKIAKNGDRHKLL 243
Query: 456 SAS-------YFNNYQTNREGFAKLFRKLSDDSWEKTI 548
+ + + Y + + K+ K+SD W+ I
Sbjct: 244 EQNGIKTVEDFLSFYNKSPDDLRKILGKISDQDWDLII 281
>08_01_0022 -
163512-163817,165963-166032,166074-166151,166399-166439,
166830-166880,166997-167065,167924-168019,169217-169328,
169629-169774,169965-170015,170171-170281,170378-170447,
172496-172935
Length = 546
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -1
Query: 309 DSMSLPRPAHPEPDRQR*EHTPSYLMRXI*WRILE 205
+S S PRP HPE D E P + R + RILE
Sbjct: 10 ESSSPPRP-HPEADMVNKEKDPEEMKRKLKERILE 43
>05_07_0196 +
28352320-28352522,28352679-28352808,28353774-28353851,
28355562-28355664,28356109-28356302,28356501-28356518
Length = 241
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Frame = +2
Query: 431 ETFLPLSPVGLLLQQLPDEQGRI----REALQEIIGRFV 535
+ FLP++ +G ++++ E G+I +E++QE + F+
Sbjct: 24 DRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFI 62
>04_04_1250 +
32077590-32078000,32078132-32078308,32078437-32078561,
32078629-32078761,32078866-32079015,32079105-32079158,
32079437-32079532,32080021-32080095,32080723-32080824,
32080903-32081589,32081686-32081817,32081916-32082023,
32082170-32082319
Length = 799
Score = 27.5 bits (58), Expect = 8.6
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = +2
Query: 341 KSAALQRVLRPIQGQPRCSERTEGISLTVFETFL--PLSPVGLLLQQLP--DEQGRIREA 508
K A LQRV+R ++ Q R S G + T+L P L +L +E+ +R
Sbjct: 295 KKAKLQRVIRSMKRQQRKSTEDTGSNYYSPLTYLKDPQGFAEKLFSRLQKCNERFEVRMM 354
Query: 509 LQEIIGRFVGENH 547
+ ++I R +G +H
Sbjct: 355 MLKVIARTIGLHH 367
>01_04_0143 +
16689471-16689498,16689687-16689818,16689974-16690013,
16690214-16690280,16690349-16690431,16690755-16690821,
16692741-16692821,16693696-16693791,16694172-16694198
Length = 206
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 196 CYFFENSPLNXSHQI*RCMLS-SLPVWLWVC 285
CY E + L+ HQI C ++ S V +W C
Sbjct: 71 CYHLEEADLHQCHQILTCTINGSSLVMIWCC 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,838,684
Number of Sequences: 37544
Number of extensions: 287769
Number of successful extensions: 770
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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