Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_K10
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11G11.04 |trs20||TRAPP complex subunit Trs20 |Schizosaccharo...    35   0.006
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    27   2.0  
SPAC15A10.12c |||sedlin family protein|Schizosaccharomyces pombe...    27   2.0  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    26   2.7  
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.1  

>SPBC11G11.04 |trs20||TRAPP complex subunit Trs20
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 35.1 bits (77), Expect = 0.006
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = +2

Query: 152 HKIY--GYVTNTRIKLVLVTSSTSPSGSNIRDAEVRTALRRLHALYADAICNPFHLPGDQ 325
           H++Y   YVT + ++ +L+  + S          ++   + LH LY   + +PF+ P   
Sbjct: 66  HEMYISAYVTPSNMRFMLLHQNQSADN-------IKLFFQELHELYIKTLMSPFYQPNQP 118

Query: 326 ITSPKFDKQVKNI 364
           I S  FD +V++I
Sbjct: 119 IRSQAFDLKVRSI 131


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +2

Query: 5   SRQWLVHTALDALEEXLTTANPNNSGTNTTTARTDLRDL 121
           SR W     ++ LEE L T  P     +T  A   LRDL
Sbjct: 392 SRPWRRINMIEYLEEKLNTKFPPGDQLHTPEANAFLRDL 430


>SPAC15A10.12c |||sedlin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 116 DLYLGLLFSTDTHKIYGYVTNTRIKLVLVTSS 211
           D +LGLL   +    Y + +NT++K +L   +
Sbjct: 59  DCFLGLLGVEEDISTYAFYSNTKVKFILAVKA 90


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 278 LYADAICNP--FHLPGDQITSPKFDKQVKNIMLNNV 379
           +YA+ +  P  FH       S KFDK  K + +N+V
Sbjct: 229 VYAEDVIEPKTFHYKNGISISMKFDKDQKKLFINDV 264


>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 258 RCAGCTLCTLTPYAIHSIYPVIK 326
           +C+ C L  ++   +HS++P+IK
Sbjct: 118 KCSTCGLFRVSRIDLHSVHPLIK 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,782,086
Number of Sequences: 5004
Number of extensions: 34213
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)