Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_K10
         (488 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0129 - 21028528-21028575,21029559-21029654,21029989-210300...    87   5e-18
04_04_0426 + 25125590-25125670,25126171-25126256,25126423-251264...    40   8e-04
01_05_0102 - 18131640-18131655,18132928-18133046,18133186-181333...    30   1.1  
07_03_1234 + 25064187-25064900                                         29   2.6  
02_03_0198 + 16251291-16252305,16252728-16252738                       28   3.5  
07_03_0561 + 19485218-19485242,19485323-19486467,19487354-194874...    28   4.6  

>09_06_0129 -
           21028528-21028575,21029559-21029654,21029989-21030070,
           21030394-21030472,21030946-21031042,21031506-21031593,
           21033326-21033687
          Length = 283

 Score = 87.4 bits (207), Expect = 5e-18
 Identities = 41/109 (37%), Positives = 65/109 (59%)
 Frame = +2

Query: 17  LVHTALDALEEXLTTANPNNSGTNTTTARTDLRDLYLGLLFSTDTHKIYGYVTNTRIKLV 196
           +VH +LD ++E +     N    N T         +LGLL+ T+ +K+YGY+TNT++K +
Sbjct: 171 VVHCSLDVIDERVNNPKRNAPALNET---------FLGLLYPTENYKVYGYLTNTKVKFI 221

Query: 197 LVTSSTSPSGSNIRDAEVRTALRRLHALYADAICNPFHLPGDQITSPKF 343
           +VT+       +++DA+ R   R+ HA Y DA+ NPFH+PG +I S  F
Sbjct: 222 MVTTDL-----DVKDADARNFFRKFHAAYVDAVSNPFHVPGKKIASRSF 265


>04_04_0426 +
           25125590-25125670,25126171-25126256,25126423-25126471,
           25126547-25126675,25126973-25127055,25127791-25127959,
           25128038-25128103
          Length = 220

 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 28/116 (24%), Positives = 54/116 (46%)
 Frame = +2

Query: 11  QWLVHTALDALEEXLTTANPNNSGTNTTTARTDLRDLYLGLLFSTDTHKIYGYVTNTRIK 190
           Q+++H ALD +++   + N          +     DL + + F    + ++ +   T  +
Sbjct: 36  QFILHAALDVVQDLAWSTN-----AMFLKSVDRFNDLVVSVYFYLYNNIVF-FNLMTHAR 89

Query: 191 LVLVTSSTSPSGSNIRDAEVRTALRRLHALYADAICNPFHLPGDQITSPKFDKQVK 358
            +L+  S S  G       +++  + +H LY     NP +LPG +ITS  FD +V+
Sbjct: 90  FMLLHDSRSEDG-------IKSFFQEVHELYIKIFLNPLYLPGSRITSSHFDTKVR 138


>01_05_0102 -
           18131640-18131655,18132928-18133046,18133186-18133300,
           18134072-18134325
          Length = 167

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +2

Query: 137 FSTDTHKIYGYVTNTRIKLVLVTSSTSPSGSNIRDAEVRTALRRLHALYAD-AICNPFHL 313
           F T+T+K+    + + IKL+L+T        + R  + R  L+ ++ LY +  + NP + 
Sbjct: 106 FKTNTYKLNFLESPSGIKLILIT--------HPRTGDQRDTLKHIYNLYVEYVVKNPLYA 157

Query: 314 PGDQI 328
           PG  I
Sbjct: 158 PGTPI 162


>07_03_1234 + 25064187-25064900
          Length = 237

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 182 EYL*RSRKFYEYLWKTVILNTSPADQFGQWLC 87
           +Y   +  F+ + W T+ L+T P D   +W C
Sbjct: 57  DYFEETVSFFAHPWHTLTLSTIPDDDTNRWSC 88


>02_03_0198 + 16251291-16252305,16252728-16252738
          Length = 341

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
 Frame = +2

Query: 41  LEEXLTTANPNNSGTNTTTARTDLRD---LYL-------GLLFSTDTHKIYGYVTNTRIK 190
           L+   TT +P N+   T     DL D    Y        GL+FST T  ++ +   TR  
Sbjct: 80  LQRGTTTTSPRNNNVATFLHAKDLSDDQQFYTTEFTHRDGLVFSTTTTSLHVFNPATRDA 139

Query: 191 LVLVTSSTS 217
           + L TSS S
Sbjct: 140 ITLPTSSRS 148


>07_03_0561 +
           19485218-19485242,19485323-19486467,19487354-19487476,
           19487553-19487626,19487886-19487946,19488285-19488370,
           19488795-19488864,19489026-19489122,19489342-19489481,
           19490225-19490308,19490313-19490346,19491833-19491951
          Length = 685

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 204 PAPRRRAAVTS-GMPK*GRRCAGCTLCTLTPYAI 302
           P PRRRAA +S G PK   R  GCTL      A+
Sbjct: 209 PPPRRRAASSSQGQPK---RWVGCTLVVCPVVAV 239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,762,779
Number of Sequences: 37544
Number of extensions: 236787
Number of successful extensions: 550
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)