Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_K10
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   4.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.0  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +2

Query: 32   LDALEEXLTTANPNNSGTNTTTARTDLRD 118
            +D L+  L  +NP N+G      R  L +
Sbjct: 1362 IDNLDVSLDVSNPKNAGKKKIDVRAKLNE 1390


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +2

Query: 110 LRDLYLGLLFS--TDTHKIYGYVTNTRIKLVLVTSSTSPSGSNIRDAEVRTALRRLHALY 283
           + +LY G+++   +D  + Y   T +          T PS    + A  + AL +L  ++
Sbjct: 160 INELYPGVVYKCVSDNGESYAKFTISVTIDGETFEGTGPSKKLAKAAASKAALAKLRNVH 219

Query: 284 ADAICNP 304
           + + C P
Sbjct: 220 SSSFCIP 226


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 286 SVQSVQPAQRRPYFGIP 236
           S Q +QP Q+ PY  +P
Sbjct: 816 SSQPMQPPQQNPYMFLP 832


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 32  LDALEEXLTTANPNNSGTNTTTAR 103
           L  LEE LTT   NN  T   + R
Sbjct: 284 LQDLEEPLTTIQHNNCLTRIPSTR 307


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,415
Number of Sequences: 438
Number of extensions: 2270
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)