Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_K06
         (707 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK222474-1|BAD96194.1|  151|Homo sapiens Niemann-Pick disease, t...    54   4e-07
X67698-1|CAA47928.1|  151|Homo sapiens protein ( H.sapiens tissu...    54   5e-07
BC002532-1|AAH02532.1|  151|Homo sapiens Niemann-Pick disease, t...    54   5e-07

>AK222474-1|BAD96194.1|  151|Homo sapiens Niemann-Pick disease, type
           C2 precursor variant protein.
          Length = 151

 Score = 54.4 bits (125), Expect = 4e-07
 Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 3/129 (2%)
 Frame = +3

Query: 195 SVPELSKAVQLHECIKLPCVLKKNTDQHIVIKFTPEKDVLDLKNSVSAKLFEIDLPFIGV 374
           SV  + K V +  C   PC L K     + + FT        K  V   L  + +PF   
Sbjct: 29  SVDGVIKEVNVSPCPTQPCQLSKGQSYSVNVTFTSNVQSKSSKAVVHGILMGVPVPF--- 85

Query: 375 DGTSVCDKIHTEDDQKSG--CPLKAGTNYIYKDTFPILSIYPSIQAEVTWALKAE-DKDV 545
                   I   D  KSG  CP++    Y Y +  P+ S YPSI+  V W L+ + ++ +
Sbjct: 86  -------PIPEPDGCKSGINCPIQKDKTYSYLNKLPVKSEYPSIKLVVEWQLQDDKNQSL 138

Query: 546 ICFRVPVKI 572
            C+ +PV+I
Sbjct: 139 FCWEIPVQI 147


>X67698-1|CAA47928.1|  151|Homo sapiens protein ( H.sapiens tissue
           specific mRNA. ).
          Length = 151

 Score = 54.0 bits (124), Expect = 5e-07
 Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 3/129 (2%)
 Frame = +3

Query: 195 SVPELSKAVQLHECIKLPCVLKKNTDQHIVIKFTPEKDVLDLKNSVSAKLFEIDLPFIGV 374
           SV  + K V +  C   PC L K     + + FT        K  V   L  + +PF   
Sbjct: 29  SVDGVIKEVNVSPCPTQPCQLSKGQSYSVNVTFTSNIQSKSSKAVVHGILMGVPVPF--- 85

Query: 375 DGTSVCDKIHTEDDQKSG--CPLKAGTNYIYKDTFPILSIYPSIQAEVTWALKAE-DKDV 545
                   I   D  KSG  CP++    Y Y +  P+ S YPSI+  V W L+ + ++ +
Sbjct: 86  -------PIPEPDGCKSGINCPIQKDKTYSYLNKLPVKSEYPSIKLVVEWQLQDDKNQSL 138

Query: 546 ICFRVPVKI 572
            C+ +PV+I
Sbjct: 139 FCWEIPVQI 147


>BC002532-1|AAH02532.1|  151|Homo sapiens Niemann-Pick disease, type
           C2 protein.
          Length = 151

 Score = 54.0 bits (124), Expect = 5e-07
 Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 3/129 (2%)
 Frame = +3

Query: 195 SVPELSKAVQLHECIKLPCVLKKNTDQHIVIKFTPEKDVLDLKNSVSAKLFEIDLPFIGV 374
           SV  + K V +  C   PC L K     + + FT        K  V   L  + +PF   
Sbjct: 29  SVDGVIKEVNVSPCPTQPCQLSKGQSYSVNVTFTSNIQSKSSKAVVHGILMGVPVPF--- 85

Query: 375 DGTSVCDKIHTEDDQKSG--CPLKAGTNYIYKDTFPILSIYPSIQAEVTWALKAE-DKDV 545
                   I   D  KSG  CP++    Y Y +  P+ S YPSI+  V W L+ + ++ +
Sbjct: 86  -------PIPEPDGCKSGINCPIQKDKTYSYLNKLPVKSEYPSIKLVVEWQLQDDKNQSL 138

Query: 546 ICFRVPVKI 572
            C+ +PV+I
Sbjct: 139 FCWEIPVQI 147


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,021,548
Number of Sequences: 237096
Number of extensions: 1606337
Number of successful extensions: 2081
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2078
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8231208258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)