Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_K03
(793 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce... 56 4e-09
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma... 28 1.8
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 27 2.3
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|... 27 2.3
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 27 4.1
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po... 26 5.4
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch... 26 7.1
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 26 7.1
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 26 7.1
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 7.1
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 7.1
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 26 7.1
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 25 9.4
>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 520
Score = 56.4 bits (130), Expect = 4e-09
Identities = 55/197 (27%), Positives = 82/197 (41%), Gaps = 12/197 (6%)
Frame = +1
Query: 169 NKNTKYFSFQGIPYAKPPVGARRFXXXXXXXXXXXXFYAYEE-GPACPSRDITYGSITVK 345
N K F GI YAKPPVG R+ Y + CP V+
Sbjct: 13 NGKEKCHRFTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQPFYNNRKNQVR 72
Query: 346 RKGM--SENCIYANVFVPASATLNSDELCEDNSLPILVNIHGGGFQTGSG-NRDLHGPEL 516
E+C++ N++VPA ++ E P+L IHGG Q G+ + P+
Sbjct: 73 NPDFKYDEDCLFLNIWVPA-----GEKPAE--GWPVLYFIHGGWLQVGNPLHYRQCDPQD 125
Query: 517 LML----KDVIVVNFNYRLAIFGYLS----LASHKIPGNNGLRDMVTLLKWVQRNAKVFG 672
L I+V+ +RL +FG+L+ L N G D L+W ++ + FG
Sbjct: 126 LQADGSPAKFILVSPGHRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTYKHIESFG 185
Query: 673 GDPXRVTILGXSAGXXS 723
G+ + + G SAG S
Sbjct: 186 GNKENIAVGGISAGSYS 202
>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 27.9 bits (59), Expect = 1.8
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 277 FYAYEEGPACPSRDITYGSI---TVKRKGMSENCIYANVFVPASATLNSDELCEDNSLPI 447
F E+ ++DI+Y S+ + KR+G+S I AN P + NS + PI
Sbjct: 125 FEGEEQSSTGNNQDISYSSVNSLSPKRRGISLMSIDANKLSPKKTSPNSGYITSPLRHPI 184
Query: 448 LVN 456
L++
Sbjct: 185 LLS 187
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 565 IFGYLSLASHKIPGNNGLRDMVTLLKWV 648
I GYLSL+ K GN+ + LL WV
Sbjct: 50 ISGYLSLSKSKALGNSSVAGSDILLSWV 77
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 170 FALSSLPHTGPESNFTSTS 114
F + LPH P+S FT T+
Sbjct: 489 FQIEDLPHPDPQSTFTGTN 507
>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 376
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +1
Query: 595 KIPGNNGLRDMVTLLKWVQRNAKVFGGDPXRVTILGXSAG 714
K P ++ + + + W+ NA + DP R+ LG G
Sbjct: 230 KFPLSDAVEFVSLCVDWIVENAIYYDADPERIFFLGEDTG 269
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 264 WLEWLQFRKSSGAYGWL 214
WL WL F KSS WL
Sbjct: 193 WLSWLSFSKSSPVVLWL 209
>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 26.2 bits (55), Expect = 5.4
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Frame = -2
Query: 510 RSMQISIARSCLEPTTVDI----HQYGQ*IVFAKFIAVQSRRRRYKYISINTVFTHS 352
R +I+++ S + PT+VDI + + IV +F VQS R Y YIS+ V THS
Sbjct: 48 RRSKIALS-SFIIPTSVDILVKVAGFQRYIVNVEFSNVQSYFRYYNYISLYFV-THS 102
>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 175 FCLRSPLSRTQVPSLTSPAHHIF 107
FCL P+ T +PS S H+F
Sbjct: 310 FCLYLPIPLTSIPSTPSIRSHVF 332
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 390 YKYISINTVFTHSFAFDGNTAVSNISRRTGRPFFVS 283
Y+YIS N V+ + A S I+ T FF +
Sbjct: 98 YEYISFNKVYEIALALGSGLVASGITSETTMLFFAA 133
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +2
Query: 71 NSVQRYMQSPSLKNV 115
N++QRY+ +P+LKNV
Sbjct: 875 NTLQRYLTNPALKNV 889
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -3
Query: 221 GGFAYGMPWKLKYLVFLFALSSLPHTGPESNFTSTSHFL 105
GGF YG+ ++ +FLF + P ++ S F+
Sbjct: 85 GGFMYGVGGTIQITLFLFLAIQIKKKAPAAHTVSECFFI 123
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 117 CAGEVRLGTCVRERGERKQKYQI 185
CAGE+ L C+++ ER K +I
Sbjct: 607 CAGEIHLERCLKDLRERFAKIEI 629
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.8 bits (54), Expect = 7.1
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 426 RRQFTAHIGEYPRWWV 473
R QF H G+ P WW+
Sbjct: 1477 RSQFLHHFGKNPSWWL 1492
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 346 RKGMSENCIYANVFVPASATLNSDELCEDNSLPILVNI 459
RKG I A P + LCEDN++P L +
Sbjct: 66 RKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTV 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,238,486
Number of Sequences: 5004
Number of extensions: 67607
Number of successful extensions: 184
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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