Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_K02
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 28 1.1
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 28 1.1
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 28 1.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.4
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.2
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 4.2
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 26 5.6
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 26 5.6
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 25 9.8
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 25 9.8
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 9.8
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 25 9.8
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch... 25 9.8
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/65 (23%), Positives = 27/65 (41%)
Frame = +1
Query: 289 MLFKDPTPWLTPMASNAPLNTPPIPTTVSTLSCTENPLPTPLK*HMLHQSPRLLPQLLMP 468
M F+ P P+ N P+ P + + + PLP+P H+++ P P +
Sbjct: 530 MQFEQQQPTTIPLQPNIPVLNQQYPVMIPAMEDSRGPLPSPA--HIMY--PEGSPGFIQH 585
Query: 469 HPRSY 483
P +
Sbjct: 586 SPNGF 590
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +1
Query: 253 VTQRVNTRPATAMLFKDPTPWLTPMASNAPLNTPPIPTTV---STLSCTENPLPTP 411
V+ R+ AT P P T + S++ ++ PPI T+ ST + T PL P
Sbjct: 1057 VSSRLPPVSATRPQIPQPPPVSTALPSSSAVSRPPIATSAGRSSTAASTSAPLTYP 1112
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 304 PTPWLTPMASNAPLNTPPIPTTVSTLSCTENPLPTPLK*HMLHQSPRLLPQLLMP 468
P +P + P++ PP+ + L N LP P+ H + SP P L P
Sbjct: 167 PVSLPSPNLPHQPISKPPVIPNLPKLQVHPNRLPHPIHNHP-YSSPTSYPPPLCP 220
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 277 PATAMLFKDPTPWLTPMASNAPLNTPPIPTTVSTLSCTENPLPT 408
P T TP + P S + +TPP P + S+ + +PLP+
Sbjct: 292 PPTGNSTTPVTPTVPP-TSTSSTSTPPPPASTSSTGTSSSPLPS 334
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 307 TPWLTPMASNAPLNTPPIPTTVSTLSCTENPLPT 408
TP + P S + + P PT+ S+ NPLPT
Sbjct: 135 TPTVPP-TSTSSTSIPIPPTSTSSTDTNSNPLPT 167
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 2.4
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +1
Query: 253 VTQRVNTRPATAMLFKDPTPWLTPMASNAPL---NTPPIPTTVSTLSCTENPLPTP 411
+++ V+T PA + P P L+ A PL + PPIP ST P TP
Sbjct: 996 LSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVP-STAPPVPIPTSTP 1050
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 304 PTPWLTPMASNAPLNTPPIPTTVSTLSCTENPLPTP 411
P P P P +TPP+P + S P+P P
Sbjct: 1035 PVPSTAPPVP-IPTSTPPVPKSSSGAPSAPPPVPAP 1069
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 459 TYAASPVVHSAPIVHSAPVAYSSPIAKYPAPFTYSAP 569
T ++ P + S S +YSSP++ Y P T P
Sbjct: 79 TSSSEPSIFSESATPSETNSYSSPVSSYSDPATSQLP 115
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 468 ASPVVHSAPIVHSAPVAYSSPIAKYPAPFTYSAPI 572
A+PVV AP VH P A +P AP +AP+
Sbjct: 519 AAPVVPEAPSVHQPPAAPVAPEVP-SAPQRPAAPV 552
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 292 LFKDPTPWLTPMASNAPLNTPPIPTTVSTLSC 387
L++ P P LTP + +P PT S SC
Sbjct: 295 LYEHPNPQLTPEMFDVKQGSPIPPTAYSGSSC 326
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +3
Query: 498 VHSAPVAYSSPIAKYPAPFTYSAPIYHH 581
+++ + SSP+ P P S P HH
Sbjct: 744 IYAGRLGVSSPVRTAPHPMAMSLPFVHH 771
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.0 bits (52), Expect = 9.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 301 DPTPWLTPMASNAPLNTPPIPTTVSTL 381
D P+ P + P PP+PT +S+L
Sbjct: 799 DGNPFKAPPPAPLPPPAPPLPTAMSSL 825
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 25.0 bits (52), Expect = 9.8
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 353 RRSPQRFQRCRAQRTPCPRR*SSICCTSRQDCC 451
+RSP+ CR ++ C R+ C R + C
Sbjct: 13 KRSPKSCLICRRRKVKCDRQQPCSRCKERNEVC 45
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -1
Query: 294 QHRRRGSRVDSLSHQ*RHLVRRMRNCIEGVRRILQQRL*QW 172
+HR ++ LS+ ++ ++ N +E VR++LQ +W
Sbjct: 1018 RHRHDRQKIMQLSNSLQNELKEHINSLESVRKVLQGDCVKW 1058
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 25.0 bits (52), Expect = 9.8
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +2
Query: 380 CRAQRTPCPRR*SSICCTSRQDCCPS 457
C ++T C + CCTS + C S
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPSCCS 289
>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 25.0 bits (52), Expect = 9.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 391 LCTTALKPLWGSAVYSTVRLM 329
+C L LWG ++Y+T+R M
Sbjct: 15 ICGVILLILWGYSLYNTLRFM 35
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,462,230
Number of Sequences: 5004
Number of extensions: 48253
Number of successful extensions: 169
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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