Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_K02
(666 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 39 0.003
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046) 35 0.052
SB_53526| Best HMM Match : Cohesin (HMM E-Value=8.4) 34 0.090
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 33 0.21
SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098) 33 0.21
SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_41264| Best HMM Match : TIL_assoc (HMM E-Value=0.87) 31 0.64
SB_40186| Best HMM Match : Extensin_2 (HMM E-Value=0.0036) 31 0.64
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_57206| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19) 30 1.9
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_11123| Best HMM Match : RVT_1 (HMM E-Value=3.4e-27) 29 2.6
SB_51563| Best HMM Match : C1_4 (HMM E-Value=2) 29 2.6
SB_8486| Best HMM Match : Granulin (HMM E-Value=0) 29 2.6
SB_19615| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011) 28 5.9
SB_32195| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42) 28 5.9
SB_8749| Best HMM Match : SCP (HMM E-Value=4.9e-16) 28 5.9
SB_43334| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_23144| Best HMM Match : Biotin_lipoyl (HMM E-Value=9.8) 28 7.9
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_35674| Best HMM Match : SH2 (HMM E-Value=0) 28 7.9
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 474 PVV-HSAP-IVHSAPVAYSSPIAKYPAPFTYSAPIYHH 581
PVV H AP +VH P+ Y P PAP Y P+YHH
Sbjct: 463 PVVYHQAPLVVHKPPIVYHRPPVVMPAPI-YHMPVYHH 499
>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
Length = 797
Score = 35.1 bits (77), Expect = 0.052
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +1
Query: 298 KDPTP-WLTPMASNAPLNTPPIPTTVSTLSCTENPLPTPLK*HMLHQSPRLLPQLLMPHP 474
+ P P + TP N+P P TT L NPLP +LH PR L P P
Sbjct: 329 RTPLPEYFTPRVINSPRTPLPAYTTPRVLHSPRNPLPAYFTPRVLHSPPR-TSLLAYPTP 387
Query: 475 R 477
R
Sbjct: 388 R 388
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Frame = +1
Query: 307 TP-WLTPMASNAPLNTPPIPTTVSTLSCTENPLPTPLK*HMLHQSPRLLPQLLMP 468
TP + TP +P N P TT L NPLP +LH LP P
Sbjct: 236 TPRYFTPRVLPSPRNQLPAYTTHRVLHSPHNPLPAYFTPRVLHSPRTPLPAYFTP 290
>SB_53526| Best HMM Match : Cohesin (HMM E-Value=8.4)
Length = 248
Score = 34.3 bits (75), Expect = 0.090
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 268 NTRPATAMLFKDPTPWLTPMASNAPLNTPPIPTTVST-LSCTENPLPTPL 414
N P TA + D +P TP+ + ++ P PT V+ ++ +P PTP+
Sbjct: 148 NPTPVTAKVNADTSPTPTPVTAKVNVDASPTPTPVTAKVNADTSPTPTPV 197
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 268 NTRPATAMLFKDPTPWLTPMASNAPLNTPPIPTTVST-LSCTENPLPTPL 414
N P TA + D +P TP+ + ++ P PT V+ ++ +P PTP+
Sbjct: 103 NPTPVTAKVNADTSPTPTPVTAKVNVDASPTPTPVTAKVNADASPNPTPV 152
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 277 PATAMLFKDPTPWLTPMASNAPLNTPPIPTTVST-LSCTENPLPTPL 414
P TA + D +P TP+ + +T P PT V+ ++ +P PTP+
Sbjct: 91 PVTAKVNADASPNPTPVTAKVNADTSPTPTPVTAKVNVDASPTPTPV 137
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 277 PATAMLFKDPTPWLTPMASNAPLNTPPIPTTVST-LSCTENPLPTPL 414
P TA + D +P TP+ + +T P PT V+ ++ +P PTP+
Sbjct: 136 PVTAKVNADASPNPTPVTAKVNADTSPTPTPVTAKVNVDASPTPTPV 182
Score = 32.3 bits (70), Expect = 0.37
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 277 PATAMLFKDPTPWLTPMASNAPLNTPPIPTTVSTLSCTENPLP 405
P TA + D +P TP+ + +T P PT V+ C E P
Sbjct: 166 PVTAKVNVDASPTPTPVTAKVNADTSPTPTPVTAKVCVETAPP 208
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 277 PATAMLFKDPTPWLTPMASNAPLNTPPIPTTVST-LSCTENPLPTPL 414
P TA + D +P TP+ + + P PT V+ ++ +P PTP+
Sbjct: 121 PVTAKVNVDASPTPTPVTAKVNADASPNPTPVTAKVNADTSPTPTPV 167
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 33.1 bits (72), Expect = 0.21
Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = +1
Query: 253 VTQRVNTRPATAMLFKDPTPWLTPMASNAPLN-TPPIPTTVSTLSCTENPLPTPLK*HML 429
VT+ T+P T K P P P P +PPIPT T E PLP
Sbjct: 164 VTETTTTKPETKPP-KPPAPSTIPTPPTPPAPPSPPIPTAPPTPPMPETPLPP------- 215
Query: 430 HQSPRLLPQLLMPH 471
SP + P L PH
Sbjct: 216 -GSPHIPPAPLHPH 228
>SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)
Length = 620
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 462 YAASPVVHSAPIVHSAPVAYSSPIAKYPAPFTYSAPI 572
Y SP+ S+P+ S+P+ SP+ P+P T S+P+
Sbjct: 168 YFPSPLTSSSPLTSSSPLTSPSPLTS-PSPLTSSSPL 203
Score = 32.3 bits (70), Expect = 0.37
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +3
Query: 465 AASPVVHSAPIVHSAPVAYSSPIAKYPAPFTYSAPI 572
++SP+ S+P+ S+P+ SSP+ P+P T +P+
Sbjct: 235 SSSPLTSSSPLTSSSPLTSSSPLTS-PSPLTSPSPL 269
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 471 SPVVHSAPIVHSAPVAYSSPIAKYPAPFTYSAPI 572
SP+ S+P+ S+P+ SSP+ +P T S+P+
Sbjct: 195 SPLTSSSPLTSSSPLTSSSPLTS-SSPLTSSSPL 227
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Frame = +3
Query: 465 AASPVVHSAPIVHSAPVAYSSPIAK-----YPAPFTYSAPI 572
++SP+ S+P+ S+P+ SSP+ P+P T S+P+
Sbjct: 199 SSSPLTSSSPLTSSSPLTSSSPLTSSSPLTSPSPLTSSSPL 239
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 465 AASPVVHSAPIVHSAPVAYSSPIAKYPAPFTYSAPI 572
++SP+ +P+ S+P+ SSP+ +P T S+P+
Sbjct: 223 SSSPLTSPSPLTSSSPLTSSSPLTS-SSPLTSSSPL 257
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 471 SPVVHSAPIVHSAPVAYSSPIAKYPAPFTYSAPI 572
SP+ +P+ S+P+ SSP+ +P T S+P+
Sbjct: 189 SPLTSPSPLTSSSPLTSSSPLTS-SSPLTSSSPL 221
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 471 SPVVHSAPIVHSAPVAYSSPIAKYPAPFTYSAPI 572
SP+ S+P+ S+P+ SSP+ +P T +P+
Sbjct: 231 SPLTSSSPLTSSSPLTSSSPLTS-SSPLTSPSPL 263
>SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 32.3 bits (70), Expect = 0.37
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 459 TYAASPVVHSAPIVHSAPVAYSSPIAKYPAPFTYSAPI 572
TY A + SAP++ P Y +P+ AP TY AP+
Sbjct: 127 TYRAPLYLPSAPLLTERPSTYRAPLYLPSAPSTYRAPL 164
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 474 PVVHSAPI-VHSAPVAYSSPIAKYPAPFTYSAPIY 575
P + AP+ + SAP Y +P+ P TY AP+Y
Sbjct: 144 PSTYRAPLYLPSAPSTYRAPLLLTERPSTYRAPLY 178
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 459 TYAASPVVHSAPIVHSAPVAYSSPIAKYPAPFTYSAPIY 575
TY A + SAP++ P Y +P+ TY AP+Y
Sbjct: 63 TYRAPLYLPSAPLLTERPSTYRAPLYLPSNTSTYRAPLY 101
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 459 TYAASPVVHSAPIVHSAPVAYSSPIAKYPAPFTYSAPIY 575
TY A + S P++ P Y + + P TY AP+Y
Sbjct: 95 TYRAPLYLPSTPLLTEHPSTYRATLLLTEHPSTYRAPLY 133
>SB_41264| Best HMM Match : TIL_assoc (HMM E-Value=0.87)
Length = 770
Score = 31.5 bits (68), Expect = 0.64
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +1
Query: 256 TQRVNTRPATAMLFKDPTPWLTPMASNAPLNTPPIPTTVSTLSCTENPLPTPLK*H 423
++R +T A+L DP W+ P AS+ + T P T S + PT L H
Sbjct: 282 SERASTSARKALLSDDPYSWMFP-ASSPLMGTSGSPVTNDGTSRADKSFPTELSRH 336
>SB_40186| Best HMM Match : Extensin_2 (HMM E-Value=0.0036)
Length = 362
Score = 31.5 bits (68), Expect = 0.64
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +1
Query: 277 PATAMLFKDPTPWLTPMASNAPLNTPPIP---TTVSTLSCTENPLPTPLK*HMLHQSPRL 447
P T TP L M + +PL +P IP TT L T +PLP+P + +P L
Sbjct: 16 PPTIPFLAATTPLL--MVTTSPLTSPTIPFLATTTPLLMVTTSPLPSPTIPFLATTTPLL 73
Query: 448 L 450
+
Sbjct: 74 M 74
Score = 31.5 bits (68), Expect = 0.64
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +1
Query: 277 PATAMLFKDPTPWLTPMASNAPLNTPPIP---TTVSTLSCTENPLPTPLK*HMLHQSPRL 447
P T TP L M + +PL P IP TT S L T +PLP P + +P L
Sbjct: 192 PPTIPFLATTTPLL--MVTTSPLPPPTIPFLATTTSLLMVTTSPLPPPTIPFLATTAPLL 249
Query: 448 L 450
+
Sbjct: 250 M 250
Score = 31.1 bits (67), Expect = 0.84
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +1
Query: 277 PATAMLFKDPTPWLTPMASNAPLNTPPIP---TTVSTLSCTENPLPTPLK*HMLHQSPRL 447
P T TP L M + +PL +P IP TT L T +PLP+P + +P L
Sbjct: 82 PPTIPFLATTTPLL--MVTTSPLPSPTIPFLATTTPLLMVTTSPLPSPTIPFLATTAPLL 139
Query: 448 L 450
+
Sbjct: 140 M 140
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +1
Query: 277 PATAMLFKDPTPWLTPMASNAPLNTPPIP---TTVSTLSCTENPLPTPLK*HMLHQSPRL 447
P T TP L M + +PL P IP TT L T +PLP P + +P L
Sbjct: 148 PPTIPFLATTTPLL--MVTTSPLPPPTIPFLATTTPLLMVTTSPLPPPTIPFLATTTPLL 205
Query: 448 L 450
+
Sbjct: 206 M 206
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 325 MASNAPLNTPPIP---TTVSTLSCTENPLPTPLK*HMLHQSPRLL 450
M + +PL P IP TT L T +PLPTP + +P L+
Sbjct: 228 MVTTSPLPPPTIPFLATTAPLLMVTTSPLPTPTIPFLATTTPLLI 272
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +1
Query: 307 TPWLTPMASNAPLNTPPIP---TTVSTLSCTENPLPTPLK*HMLHQSPRLL 450
TP L M + +PL +P IP TT L T +PLP P + +P L+
Sbjct: 114 TPLL--MVTTSPLPSPTIPFLATTAPLLMVTTSPLPPPTIPFLATTTPLLM 162
>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2014
Score = 31.1 bits (67), Expect = 0.84
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 297 QGSYSVVDPDGIKRTVEYTADPHNGFNAVVHREP 398
+GSY D DG +RT+EY + G+ H P
Sbjct: 1742 KGSYDTHDVDGRRRTIEYYSGTPQGYLPPAHTRP 1775
>SB_57206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 459 TYAASPVVHSAPIVHSAPVAYSSPIAKYPAPFTYSAPI 572
T A SP + S+P AP+ S P++ Y +PF+ A +
Sbjct: 28 TVALSPYLPSSPYPCHAPLPVSQPLSPYMSPFSPGAMV 65
>SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/56 (41%), Positives = 28/56 (50%)
Frame = +1
Query: 241 MASLVTQRVNTRPATAMLFKDPTPWLTPMASNAPLNTPPIPTTVSTLSCTENPLPT 408
++S T V + P TA L PT +TP ASNA T T ST + T P PT
Sbjct: 422 VSSTETVSVTSAP-TATLTSAPTATVTPTASNAFTET---TTVTSTTTITVLPQPT 473
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +1
Query: 277 PATAMLFKDPTPWLTPMASNAPLNTPPIPTTVSTLSCTENPLPTP 411
P L +P P L P P +PTT +T + T P P P
Sbjct: 909 PPPLPLAPEPPPPLPPPPPPIQTTRPTVPTTPTTQASTTRPTPPP 953
>SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19)
Length = 619
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 352 PPIPTTVSTLSCTENPL-PTPLK*HMLHQSPRLLPQLLMPHP 474
PP P T + SC +P+ PTPL + H P PQL P P
Sbjct: 50 PPPPPTRPSHSCGPHPVPPTPL---VQHPEPEAPPQLPPPPP 88
>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1417
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 256 TQRVNTRPATAMLFKDPTPWLTPMASNAPLNTP--PIPTTVSTLSCTENPLPTPLK 417
T + P+T + P+P TP+ + P TP P P+T ST +P TP+K
Sbjct: 1303 TTPIKPSPSTTPI--KPSPSTTPIKPS-PSTTPIKPSPSTTSTTPIKPSPSTTPIK 1355
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +1
Query: 244 ASLVTQR-VNTRPATAMLFKDPTPWLTPMASNAPLNTP--PIPTTVSTLSCTENPLPTPL 414
+SL++ + + P+T + P+ T +P P P P+T ST +P TP+
Sbjct: 1247 SSLISYKPIKPSPSTTPIKPSPSTTSTTPIKPSPSTNPIKPSPSTTSTTPIKPSPSTTPI 1306
Query: 415 K 417
K
Sbjct: 1307 K 1307
>SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 863
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = +1
Query: 238 KMASLVTQRVNTRPATAMLFKDPTPWLTPMASNAPLNTPP-IPTTVSTLSCTENPLPTP 411
K+ R NT T + TPW TP N P +TP T ST S P TP
Sbjct: 501 KVTESTPSRYNTPLPTPSRYN--TPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTP 557
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 262 RVNTRPATAMLFKDPTPWLTPMASNAPLNTPP-IPTTVSTLSCTENPLPTP 411
R NT +T + TPW TP N P +TP T ST S P TP
Sbjct: 539 RYNTPWSTPSRYN--TPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTP 587
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 262 RVNTRPATAMLFKDPTPWLTPMASNAPLNTPP-IPTTVSTLSCTENPLPTP 411
R NT +T + TPW TP N P +TP T ST S P TP
Sbjct: 569 RYNTPWSTPSRYN--TPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTP 617
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 262 RVNTRPATAMLFKDPTPWLTPMASNAPLNTPP-IPTTVSTLSCTENPLPTP 411
R NT +T + TPW TP N P +TP T ST S P TP
Sbjct: 599 RYNTPWSTPSRYN--TPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTP 647
>SB_11123| Best HMM Match : RVT_1 (HMM E-Value=3.4e-27)
Length = 1154
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +3
Query: 231 DVQDGVTGDSKSQHE---TRDGDVVQGSYSVVDPDGIKRTVEYTADPHNG 371
DV+D KS+ E +DG +++G+ VV P G KR +E + H G
Sbjct: 664 DVKDPELLPYKSKREELSVQDGCILRGARVVVPPQGRKRVLEDLHEAHPG 713
>SB_51563| Best HMM Match : C1_4 (HMM E-Value=2)
Length = 322
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 459 TYAASPVVHSAPIVHSAPVAYSSPIAKYPAPFTYSAPI 572
T A SP + S P AP+ S P++ Y +PF+ A +
Sbjct: 28 TVALSPYLPSCPHPCHAPLPVSQPLSPYMSPFSPGAMV 65
>SB_8486| Best HMM Match : Granulin (HMM E-Value=0)
Length = 878
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +2
Query: 401 CPRR*SSICCTSRQDCCPS-YLC 466
CP S++CC Q CCPS Y C
Sbjct: 755 CPLP-SAVCCADMQHCCPSGYTC 776
>SB_19615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1376
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 283 TAMLFKDPTPWLTPMASNAPLNTPPIPTTVSTLSCTENPLPTP 411
T +L K+P P A LN PIP S L + P P P
Sbjct: 512 TPVLGKEPAPEFDIKKGRAGLNNLPIPRPRSQLHVSTLPRPVP 554
>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
Length = 734
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +1
Query: 283 TAMLFKDPTPWLTPMASNA-PLNTPPIPTTVSTLSCTENPLPTPLK*HMLHQSPRLLPQL 459
T + P PW P + L +PP VS + C + P+PL +P + P+
Sbjct: 426 TIIHMHSPDPWYAPATVHYHSLYSPPPMLCVSVMRCPDLYPPSPLMSPASSCTPDIQPRF 485
Query: 460 LMP 468
+P
Sbjct: 486 KVP 488
>SB_32195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 307 TPWLTPMASNAPLNTPPIPTTVSTLSCTE 393
T WL P+ +APL P ++S++ C+E
Sbjct: 171 TSWLPPVIHDAPLVCPSYCDSLSSVQCSE 199
>SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)
Length = 426
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +1
Query: 298 KDPTPWLTPMAS--NAPLNTPPIPTTVSTLSCTENPLPTPLK*HMLHQSPRLLPQLLMPH 471
K P P +TP + AP PP+P S P P PL M L P++L P
Sbjct: 281 KAPVPPMTPPPAVVTAPPPAPPLPNFTSP----SPPPPPPLPPAMPAMDDLLPPEVLSPP 336
Query: 472 P 474
P
Sbjct: 337 P 337
>SB_8749| Best HMM Match : SCP (HMM E-Value=4.9e-16)
Length = 369
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 277 PATAMLFKDPTPWLTPMASNAPLNTPPIPTTVSTLSCTENPLPTP 411
PA A + + P LT PL+T P+P +SC ++ P P
Sbjct: 111 PAVAPVNQAPATGLTGF--EMPLSTQPVPVIGGGMSCCQSANPPP 153
>SB_43334| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 494
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 304 PTPWLTPMASNAPLNTPPIPTTVSTLSCTE-NP 399
P+P ++ + N PLN PP P T S + NP
Sbjct: 351 PSPPMSGIFPNGPLNIPPFPETAGKPSSSRLNP 383
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 277 PATAMLFKDPTPWLTPMASNAPLNTPPIPTTVSTLSCTENP 399
P T P+ TP + P +TP P+T STLS P
Sbjct: 180 PITPSTLSTPSTPSTPSTRSTP-STPSTPSTPSTLSMPSTP 219
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 277 PATAMLFKDPTPWLTPMASNAPLNTPPIPTTVSTLSCTENP 399
P T P+ TP + P +TP P+T STLS P
Sbjct: 730 PITPSTLSTPSTPSTPSTRSTP-STPSTPSTPSTLSMPSTP 769
>SB_23144| Best HMM Match : Biotin_lipoyl (HMM E-Value=9.8)
Length = 929
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +3
Query: 231 DVQDGVTGDSKSQHETRDGDVVQGSYSVVDPDGIKRTVEYTADPHNG 371
DV DGV+ + + DGD V S D DG+ V D NG
Sbjct: 176 DVSDGVSDGNDVSNVASDGDDVSNGAS--DSDGVSNGVSDGDDVSNG 220
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +2
Query: 404 PRR*SSICCTSRQDCCPSYLCRIPGRTLCSYRALRPCRLLIPY 532
P R C S CCP+ C G+T+C R C L PY
Sbjct: 1796 PCRTDDDCFESGMKCCPTR-CSY-GKTMCIPRVSAVCPLRTPY 1836
>SB_35674| Best HMM Match : SH2 (HMM E-Value=0)
Length = 871
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 352 PPIPTTVSTLSCTENPLPTPLK*HMLHQSPRLLPQ 456
PP+P T S ++ P P P H+ Q P LP+
Sbjct: 820 PPLPLTYGVGSMSKGPPPRPPGDHIGPQPPGTLPE 854
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,687,136
Number of Sequences: 59808
Number of extensions: 436560
Number of successful extensions: 1935
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1842
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -