Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_J22
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...   177   6e-45
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...   165   2e-41
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...   120   7e-28
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...   100   1e-21
Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical pr...    38   0.008
AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine re...    36   0.025
AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical ...    29   2.9  
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF040660-8|AAN65288.1|  594|Caenorhabditis elegans Hypothetical ...    27   8.9  
AF040660-6|AAN65286.1|  541|Caenorhabditis elegans Hypothetical ...    27   8.9  
AF040660-5|AAC71149.1|  651|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score =  177 bits (431), Expect = 6e-45
 Identities = 83/156 (53%), Positives = 102/156 (65%)
 Frame = +2

Query: 191 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 370
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89

Query: 371 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTXLVX 550
             +A+  FK+L+KYRPE+                         RPNT+R G NT+T LV 
Sbjct: 90  SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVE 149

Query: 551 XXXXXXXXIAHDVDPIELVLFLPALCRKMGVPYCIV 658
                   IAHDV+P+E+VL LPALCRK  VPY I+
Sbjct: 150 TRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAII 185


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score =  165 bits (402), Expect = 2e-41
 Identities = 83/156 (53%), Positives = 102/156 (65%)
 Frame = +2

Query: 191 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 370
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89

Query: 371 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTXLVX 550
             +A+  FK+L+KYRPE+                         RPNT+R G NT+T LV 
Sbjct: 90  SQSARQAFKLLDKYRPES--------------------TEVTKRPNTVRHGVNTITRLVE 129

Query: 551 XXXXXXXXIAHDVDPIELVLFLPALCRKMGVPYCIV 658
                   IAHDV+P+E+VL LPALCRK  VPY I+
Sbjct: 130 TRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAII 165


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score =  120 bits (290), Expect = 7e-28
 Identities = 52/78 (66%), Positives = 65/78 (83%)
 Frame = +2

Query: 191 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 370
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192

Query: 371 KTTAKGLFKILEKYRPET 424
             +A+  FK+L+KYRPE+
Sbjct: 193 SHSARQAFKLLDKYRPES 210


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score =  100 bits (239), Expect = 1e-21
 Identities = 43/60 (71%), Positives = 51/60 (85%)
 Frame = +2

Query: 191 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 370
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192


>Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical
           protein M28.5 protein.
          Length = 128

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 512 IRSGTNTVTXLVXXXXXXXXXIAHDVDPIELVLFLPALCRKMGVPYCIV 658
           ++ G N  T  +         +A D +P+E++L LP LC    VPY  V
Sbjct: 35  LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFV 83


>AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 6 protein.
          Length = 330

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
 Frame = -3

Query: 466 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 347
           SF SFP  QP+   C +++P F+ N+EKA + C ++Q  G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205


>AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical
           protein Y48A6B.3 protein.
          Length = 163

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +2

Query: 509 TIRSGTNTVTXLVXXXXXXXXXIAHDVDPIELVLFLPALCRKMGVPYCIV 658
           T+R G   V   +         +A +V PI++   +P +C +  +PY  +
Sbjct: 68  TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYI 117


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +3

Query: 339 LRSTNLPRHWTRLQLRA 389
           +RSTNL  +WT LQLRA
Sbjct: 65  VRSTNLDTNWTWLQLRA 81


>AF040660-8|AAN65288.1|  594|Caenorhabditis elegans Hypothetical
           protein W05G11.6d protein.
          Length = 594

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 535 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 404
           D VC   DGV P+  +  ++    F       FPGC + RP+++
Sbjct: 118 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 159


>AF040660-6|AAN65286.1|  541|Caenorhabditis elegans Hypothetical
           protein W05G11.6b protein.
          Length = 541

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 535 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 404
           D VC   DGV P+  +  ++    F       FPGC + RP+++
Sbjct: 8   DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 49


>AF040660-5|AAC71149.1|  651|Caenorhabditis elegans Hypothetical
           protein W05G11.6a protein.
          Length = 651

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 535 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 404
           D VC   DGV P+  +  ++    F       FPGC + RP+++
Sbjct: 118 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,902,006
Number of Sequences: 27780
Number of extensions: 257886
Number of successful extensions: 769
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)