Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_J19
(717 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VI10 Cluster: Probable small nuclear ribonucleoprotei... 179 7e-44
UniRef50_P62316 Cluster: Small nuclear ribonucleoprotein Sm D2; ... 165 1e-39
UniRef50_A7Q0D5 Cluster: Chromosome chr7 scaffold_42, whole geno... 161 2e-38
UniRef50_Q01DG8 Cluster: Small nuclear ribonucleoprotein D2-like... 152 7e-36
UniRef50_A3FQL7 Cluster: Small nuclear ribonucleoprotein; n=2; C... 127 2e-28
UniRef50_A7AWS6 Cluster: Small nuclear ribonucleoprotein, putati... 120 5e-26
UniRef50_Q9C252 Cluster: Probable small nuclear ribonucleoprotei... 110 3e-23
UniRef50_Q06217 Cluster: Small nuclear ribonucleoprotein Sm D2; ... 108 1e-22
UniRef50_Q2H8N5 Cluster: Predicted protein; n=1; Chaetomium glob... 103 4e-21
UniRef50_A0CQT6 Cluster: Chromosome undetermined scaffold_24, wh... 87 4e-16
UniRef50_Q3LVZ4 Cluster: MRNA splicing factor; n=1; Bigelowiella... 79 1e-13
UniRef50_Q94B79 Cluster: Small nuclear ribonucleoprotein-like pr... 70 7e-11
UniRef50_A2FU85 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 69 1e-10
UniRef50_Q8SR04 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN D2; n=1... 67 4e-10
UniRef50_Q9AVX5 Cluster: Small nuclear ribonucleoprotein SM D2; ... 64 3e-09
UniRef50_Q4Q3L7 Cluster: Small nuclear ribonucleoprotein SmD2; n... 64 4e-09
UniRef50_Q29329 Cluster: Small nuclear ribonucleoprotein Sm D2; ... 52 1e-05
UniRef50_Q8IGW7 Cluster: RE11655p; n=12; Eukaryota|Rep: RE11655p... 50 4e-05
UniRef50_Q8IB34 Cluster: Ribonucleoprotein, putative; n=1; Plasm... 50 4e-05
UniRef50_P62310 Cluster: U6 snRNA-associated Sm-like protein LSm... 50 8e-05
UniRef50_A7APW1 Cluster: LSM domain containing protein; n=1; Bab... 49 1e-04
UniRef50_Q4N631 Cluster: Sm protein, putative; n=1; Theileria pa... 47 5e-04
UniRef50_A5K5Q0 Cluster: U6 snRNA-associated Sm-like protein LSm... 46 7e-04
UniRef50_UPI00015B4C2B Cluster: PREDICTED: similar to ENSANGP000... 45 0.002
UniRef50_UPI000021D358 Cluster: PREDICTED: similar to LSM3 homol... 45 0.002
UniRef50_Q54HH8 Cluster: Putative small nuclear ribonucleopartic... 45 0.002
UniRef50_Q6BQK4 Cluster: Similar to CA3420|CaSMX4 Candida albica... 44 0.004
UniRef50_Q6BK43 Cluster: Similar to sp|P40089 Saccharomyces cere... 44 0.004
UniRef50_Q9Y7M4 Cluster: Probable U6 snRNA-associated Sm-like pr... 44 0.004
UniRef50_UPI00003C0461 Cluster: PREDICTED: similar to CG12924-PA... 44 0.005
UniRef50_Q7QZM9 Cluster: GLP_680_47464_47838; n=1; Giardia lambl... 40 0.046
UniRef50_A7DRH4 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 40 0.046
UniRef50_A4FX23 Cluster: Like-Sm ribonucleoprotein, core; n=4; M... 40 0.081
UniRef50_A0DH27 Cluster: Chromosome undetermined scaffold_50, wh... 39 0.11
UniRef50_Q0UCR7 Cluster: Putative uncharacterized protein; n=1; ... 38 0.25
UniRef50_Q7QPB0 Cluster: GLP_122_3813_3433; n=1; Giardia lamblia... 38 0.33
UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm... 38 0.33
UniRef50_Q9FI15 Cluster: Similarity to small nuclear ribonucleop... 37 0.43
UniRef50_Q7S1Q3 Cluster: Putative uncharacterized protein NCU095... 36 0.76
UniRef50_Q7PT02 Cluster: ENSANGP00000018479; n=1; Anopheles gamb... 36 1.00
UniRef50_Q2FT45 Cluster: Like-Sm ribonucleoprotein, core; n=3; M... 36 1.3
UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 35 1.7
UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4; Eu... 35 2.3
UniRef50_Q5KN63 Cluster: Sm-like protein, putative; n=1; Filobas... 34 3.0
UniRef50_Q59ZT4 Cluster: Potential RNA processing complex subuni... 34 3.0
UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog... 34 3.0
UniRef50_A3BPN8 Cluster: Putative uncharacterized protein; n=1; ... 34 4.0
UniRef50_Q8IL38 Cluster: Small nuclear ribonuclear protein, puta... 33 5.3
UniRef50_Q0UX37 Cluster: Predicted protein; n=1; Phaeosphaeria n... 33 5.3
UniRef50_Q2QT80 Cluster: Retrotransposon protein, putative, uncl... 33 7.0
UniRef50_P57670 Cluster: Putative snRNP Sm-like protein; n=4; Th... 33 7.0
UniRef50_A0BES6 Cluster: Chromosome undetermined scaffold_102, w... 33 9.3
>UniRef50_Q9VI10 Cluster: Probable small nuclear ribonucleoprotein
Sm D2; n=32; Eukaryota|Rep: Probable small nuclear
ribonucleoprotein Sm D2 - Drosophila melanogaster (Fruit
fly)
Length = 119
Score = 179 bits (435), Expect = 7e-44
Identities = 88/105 (83%), Positives = 93/105 (88%), Gaps = 1/105 (0%)
Frame = +3
Query: 108 LSKIEXEXFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 287
L++ E E F+TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT
Sbjct: 15 LARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 74
Query: 288 EVPRT-XXXXXXXAVNKDKFISKMFLRGDSVILVLRNPLATAAGK 419
E+PRT VNKD+FISKMFLRGDSVILVLRNPLATAAGK
Sbjct: 75 ELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNPLATAAGK 119
>UniRef50_P62316 Cluster: Small nuclear ribonucleoprotein Sm D2;
n=31; Eukaryota|Rep: Small nuclear ribonucleoprotein Sm
D2 - Homo sapiens (Human)
Length = 118
Score = 165 bits (401), Expect = 1e-39
Identities = 83/105 (79%), Positives = 89/105 (84%), Gaps = 1/105 (0%)
Frame = +3
Query: 108 LSKIEXEXFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 287
L K E E F+TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT
Sbjct: 16 LQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 75
Query: 288 EVPRT-XXXXXXXAVNKDKFISKMFLRGDSVILVLRNPLATAAGK 419
EVP++ VNKD++ISKMFLRGDSVI+VLRNPL AGK
Sbjct: 76 EVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL--IAGK 118
>UniRef50_A7Q0D5 Cluster: Chromosome chr7 scaffold_42, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr7 scaffold_42, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 170
Score = 161 bits (391), Expect = 2e-38
Identities = 82/117 (70%), Positives = 90/117 (76%), Gaps = 1/117 (0%)
Frame = +3
Query: 51 NHPKCRQQLSHALKCP*SSLSKIEXEXFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRV 230
N PK R Q+ + +K E E FSTGPLSVL SVKNNTQVLINCRNNKKLLGRV
Sbjct: 59 NDPKLRLQMED------DATAKNEGEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRV 112
Query: 231 KAFDRHCNMVLENVKEMWTEVPRT-XXXXXXXAVNKDKFISKMFLRGDSVILVLRNP 398
+AFDRHCNMVLENV+EMWTEVP+T VNKD+FISKMFLRGDSVI+VLRNP
Sbjct: 113 RAFDRHCNMVLENVREMWTEVPKTGKGKKKANPVNKDRFISKMFLRGDSVIIVLRNP 169
>UniRef50_Q01DG8 Cluster: Small nuclear ribonucleoprotein D2-like
protein; n=5; Eukaryota|Rep: Small nuclear
ribonucleoprotein D2-like protein - Ostreococcus tauri
Length = 103
Score = 152 bits (369), Expect = 7e-36
Identities = 73/94 (77%), Positives = 79/94 (84%), Gaps = 1/94 (1%)
Frame = +3
Query: 120 EXEXFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPR 299
E F+TGPLSVLT SVK NTQVLINCRNN+KLL RVKAFDRHCNMVLENVKE+WTEVP+
Sbjct: 9 EENEFTTGPLSVLTASVKANTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEIWTEVPK 68
Query: 300 T-XXXXXXXAVNKDKFISKMFLRGDSVILVLRNP 398
T VNKD+F+SKMFLRGDSVILVLRNP
Sbjct: 69 TGKGSAKAKPVNKDRFVSKMFLRGDSVILVLRNP 102
>UniRef50_A3FQL7 Cluster: Small nuclear ribonucleoprotein; n=2;
Cryptosporidium|Rep: Small nuclear ribonucleoprotein -
Cryptosporidium parvum Iowa II
Length = 106
Score = 127 bits (307), Expect = 2e-28
Identities = 53/88 (60%), Positives = 73/88 (82%)
Frame = +3
Query: 135 STGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXX 314
S GPLS+LT+ VK NTQ+L+NCRNN+K+LGRVKAFDRHCN++L + +E+WTE ++
Sbjct: 18 SEGPLSLLTECVKTNTQILVNCRNNRKILGRVKAFDRHCNLLLTDAREIWTESMKSGKKG 77
Query: 315 XXXAVNKDKFISKMFLRGDSVILVLRNP 398
+NKD+FISK+F+RGDSVIL+L++P
Sbjct: 78 SAKYINKDRFISKLFVRGDSVILILKSP 105
>UniRef50_A7AWS6 Cluster: Small nuclear ribonucleoprotein, putative;
n=1; Babesia bovis|Rep: Small nuclear ribonucleoprotein,
putative - Babesia bovis
Length = 162
Score = 120 bits (288), Expect = 5e-26
Identities = 57/98 (58%), Positives = 76/98 (77%)
Frame = +3
Query: 105 SLSKIEXEXFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 284
S+S E + +GPLSVL V++N+QVLINCR+N+KLLGRVKAFDRH NM+L +V+EMW
Sbjct: 66 SMSTTEDKDCPSGPLSVLEACVRDNSQVLINCRSNRKLLGRVKAFDRHFNMILTDVREMW 125
Query: 285 TEVPRTXXXXXXXAVNKDKFISKMFLRGDSVILVLRNP 398
TEV + +NKD++IS++FLRGDSV++VL NP
Sbjct: 126 TEV--SGGGGKKKYMNKDRYISRLFLRGDSVVVVLSNP 161
>UniRef50_Q9C252 Cluster: Probable small nuclear ribonucleoprotein
chain D2; n=1; Neurospora crassa|Rep: Probable small
nuclear ribonucleoprotein chain D2 - Neurospora crassa
Length = 126
Score = 110 bits (265), Expect = 3e-23
Identities = 51/85 (60%), Positives = 64/85 (75%)
Frame = +3
Query: 108 LSKIEXEXFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 287
+S +E FS GPLS+L +V++++QVLI+ RN +K+L RVKAFDRH NMVLENVKEMWT
Sbjct: 24 VSLLEEHEFSAGPLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMNMVLENVKEMWT 83
Query: 288 EVPRTXXXXXXXAVNKDKFISKMFL 362
E PR VNKD+FISKMF+
Sbjct: 84 ETPRLANGKKGKPVNKDRFISKMFV 108
>UniRef50_Q06217 Cluster: Small nuclear ribonucleoprotein Sm D2;
n=31; Eukaryota|Rep: Small nuclear ribonucleoprotein Sm
D2 - Saccharomyces cerevisiae (Baker's yeast)
Length = 110
Score = 108 bits (260), Expect = 1e-22
Identities = 50/100 (50%), Positives = 71/100 (71%)
Frame = +3
Query: 102 SSLSKIEXEXFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 281
+ L ++E F GP+S++ ++ T V+I+ RNN K++ RVKAFDRHCNMVLENVKE+
Sbjct: 16 AELEELEEFEFKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKEL 75
Query: 282 WTEVPRTXXXXXXXAVNKDKFISKMFLRGDSVILVLRNPL 401
WTE +N+++FISK+FLRGDSVI+VL+ P+
Sbjct: 76 WTE------KKGKNVINRERFISKLFLRGDSVIVVLKTPV 109
>UniRef50_Q2H8N5 Cluster: Predicted protein; n=1; Chaetomium
globosum|Rep: Predicted protein - Chaetomium globosum
(Soil fungus)
Length = 103
Score = 103 bits (247), Expect = 4e-21
Identities = 49/89 (55%), Positives = 65/89 (73%)
Frame = +3
Query: 90 KCP*SSLSKIEXEXFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 269
+C ++++E S GPLS+L +V++++QVLI+ R+N+KLL RVKAFDRHCNM+LEN
Sbjct: 16 ECTEYEIAQLENWEMSNGPLSLLQTAVRSHSQVLISIRSNRKLLARVKAFDRHCNMILEN 75
Query: 270 VKEMWTEVPRTXXXXXXXAVNKDKFISKM 356
VKEMWTE P VNKD+FISKM
Sbjct: 76 VKEMWTETP-VHNGKKGRPVNKDRFISKM 103
>UniRef50_A0CQT6 Cluster: Chromosome undetermined scaffold_24, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_24,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 152
Score = 87.0 bits (206), Expect = 4e-16
Identities = 47/101 (46%), Positives = 59/101 (58%), Gaps = 9/101 (8%)
Frame = +3
Query: 120 EXEXFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPR 299
E GP +LT ++ +NTQ + RNN+K LGRVKAFDRH NM+LEN+ EMW E+ +
Sbjct: 50 EEATLEKGPFGLLTITMNHNTQAFLELRNNRKHLGRVKAFDRHMNMILENLTEMWIEISK 109
Query: 300 TXXXXX-----XXAVNKDK----FISKMFLRGDSVILVLRN 395
N+ K +I KMFLRGDSVI LRN
Sbjct: 110 ETKGKSPCYKQRKIQNQYKIIFYYIPKMFLRGDSVIYTLRN 150
>UniRef50_Q3LVZ4 Cluster: MRNA splicing factor; n=1; Bigelowiella
natans|Rep: MRNA splicing factor - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 101
Score = 79.0 bits (186), Expect = 1e-13
Identities = 33/82 (40%), Positives = 53/82 (64%)
Frame = +3
Query: 141 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXX 320
GP +L++ K N++++I+ +N K G ++ FD+HCN++LE+V E+W E
Sbjct: 16 GPFMLLSKVTKLNSKIIISSNDNHKFYGFIRGFDKHCNLMLEDVTEIWKEETTDARSLKK 75
Query: 321 XAVNKDKFISKMFLRGDSVILV 386
V K+KFI K+F RGD+VIL+
Sbjct: 76 KVVIKEKFIPKLFFRGDAVILI 97
>UniRef50_Q94B79 Cluster: Small nuclear ribonucleoprotein-like
protein; n=1; Arabidopsis thaliana|Rep: Small nuclear
ribonucleoprotein-like protein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 135
Score = 69.7 bits (163), Expect = 7e-11
Identities = 32/40 (80%), Positives = 35/40 (87%)
Frame = +3
Query: 114 KIEXEXFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVK 233
K E E F+TGPLSVL SVKNNTQVLINCRNN+KLLGRV+
Sbjct: 13 KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVR 52
Score = 46.8 bits (106), Expect = 5e-04
Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +1
Query: 232 RLSTGIVTWYWRMLRKCGLRYRELAKERRAK-L*TRTNSSPKCS 360
RL TG TW+ +M KCGLR+R+ KERR L T +SS +CS
Sbjct: 52 RLLTGTATWFLKMSEKCGLRFRKPEKERRKLFLLTEIDSSARCS 95
>UniRef50_A2FU85 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 111
Score = 68.9 bits (161), Expect = 1e-10
Identities = 37/101 (36%), Positives = 57/101 (56%)
Frame = +3
Query: 96 P*SSLSKIEXEXFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 275
P S+ E TGP++ + ++V + +LI R+N+KL G +KA DRH NM+LE+V
Sbjct: 7 PEDSMEPSEMTNLQTGPMAPIVKAVYDKEPLLIALRSNRKLYGYIKAVDRHWNMILEHVI 66
Query: 276 EMWTEVPRTXXXXXXXAVNKDKFISKMFLRGDSVILVLRNP 398
E+ P A + I+++FLRGD+VI + NP
Sbjct: 67 EI---TPTPAKPGQPAAAPIQRRINRLFLRGDNVICIYPNP 104
>UniRef50_Q8SR04 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN D2; n=1;
Encephalitozoon cuniculi|Rep: SMALL NUCLEAR
RIBONUCLEOPROTEIN D2 - Encephalitozoon cuniculi
Length = 135
Score = 67.3 bits (157), Expect = 4e-10
Identities = 31/82 (37%), Positives = 53/82 (64%)
Frame = +3
Query: 141 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXX 320
GPLS++ +++ VL++ R+N+K+LGRV A+DRH N+++E+ KE+ T +
Sbjct: 20 GPLSLVRRAMVKMKPVLVSLRSNRKVLGRVVAYDRHYNLLMEDAKELGTTRGKNKGRKKR 79
Query: 321 XAVNKDKFISKMFLRGDSVILV 386
+ + K+F+RGD+VILV
Sbjct: 80 QGCEFSRKLGKVFIRGDTVILV 101
>UniRef50_Q9AVX5 Cluster: Small nuclear ribonucleoprotein SM D2;
n=1; Guillardia theta|Rep: Small nuclear
ribonucleoprotein SM D2 - Guillardia theta (Cryptomonas
phi)
Length = 82
Score = 64.1 bits (149), Expect = 3e-09
Identities = 30/82 (36%), Positives = 50/82 (60%)
Frame = +3
Query: 144 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 323
P ++ V+N+ V+I RNNK+++G++ +D+H N++LENV E+
Sbjct: 3 PFDYISGCVRNDKSVMIILRNNKRMIGKIINYDKHLNLLLENV----NEIKFVGENFSEL 58
Query: 324 AVNKDKFISKMFLRGDSVILVL 389
K KFI K+FLRGD+++L+L
Sbjct: 59 IKIKSKFIPKVFLRGDNIVLIL 80
>UniRef50_Q4Q3L7 Cluster: Small nuclear ribonucleoprotein SmD2; n=7;
Trypanosomatidae|Rep: Small nuclear ribonucleoprotein
SmD2 - Leishmania major
Length = 103
Score = 63.7 bits (148), Expect = 4e-09
Identities = 35/86 (40%), Positives = 52/86 (60%)
Frame = +3
Query: 141 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXX 320
GP S+L ++K +V I CRN+K LL V AFD+H N+VL+ V+E+ TE
Sbjct: 27 GPFSLLDTAMKEKKRVFIQCRNSKALLAHVIAFDKHFNLVLKGVQEI-TE--------SH 77
Query: 321 XAVNKDKFISKMFLRGDSVILVLRNP 398
+ K + I +FLRG+SVI +++ P
Sbjct: 78 GSEQKQRTIENLFLRGESVIFIVKLP 103
>UniRef50_Q29329 Cluster: Small nuclear ribonucleoprotein Sm D2;
n=1; Sus scrofa|Rep: Small nuclear ribonucleoprotein Sm
D2 - Sus scrofa (Pig)
Length = 50
Score = 52.4 bits (120), Expect = 1e-05
Identities = 25/35 (71%), Positives = 26/35 (74%)
Frame = +3
Query: 108 LSKIEXEXFSTGPLSVLTQSVKNNTQVLINCRNNK 212
L K E E F+TGPLSV TQS K TQVLINCRN K
Sbjct: 16 LQKREEEEFNTGPLSVXTQSXKTXTQVLINCRNTK 50
>UniRef50_Q8IGW7 Cluster: RE11655p; n=12; Eukaryota|Rep: RE11655p -
Drosophila melanogaster (Fruit fly)
Length = 103
Score = 50.4 bits (115), Expect = 4e-05
Identities = 29/81 (35%), Positives = 44/81 (54%)
Frame = +3
Query: 144 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 323
PL ++ S+ + +V + RN ++L GR+ AFD+H NMVL + +E T V
Sbjct: 18 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 75
Query: 324 AVNKDKFISKMFLRGDSVILV 386
+ I +F+RGD VILV
Sbjct: 76 YKTAKRTIPMLFVRGDGVILV 96
>UniRef50_Q8IB34 Cluster: Ribonucleoprotein, putative; n=1;
Plasmodium falciparum 3D7|Rep: Ribonucleoprotein,
putative - Plasmodium falciparum (isolate 3D7)
Length = 74
Score = 50.4 bits (115), Expect = 4e-05
Identities = 20/68 (29%), Positives = 42/68 (61%)
Frame = +3
Query: 183 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKMFL 362
++ + C+ +++L+G++ A+D H NM+L NV+E + + + ++ + +F+
Sbjct: 4 EIFLKCKGDRELIGKLDAYDNHLNMILSNVRETYKYSVKENDEETVKKMERN--LDMVFV 61
Query: 363 RGDSVILV 386
RGDS+ILV
Sbjct: 62 RGDSIILV 69
>UniRef50_P62310 Cluster: U6 snRNA-associated Sm-like protein LSm3;
n=39; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm3 - Homo sapiens (Human)
Length = 102
Score = 49.6 bits (113), Expect = 8e-05
Identities = 25/81 (30%), Positives = 47/81 (58%)
Frame = +3
Query: 144 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 323
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T +
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 324 AVNKDKFISKMFLRGDSVILV 386
+ + I +F+RGD V+LV
Sbjct: 75 YKSTKRNIPMLFVRGDGVVLV 95
>UniRef50_A7APW1 Cluster: LSM domain containing protein; n=1;
Babesia bovis|Rep: LSM domain containing protein -
Babesia bovis
Length = 89
Score = 49.2 bits (112), Expect = 1e-04
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Frame = +3
Query: 135 STGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT--EVPRTXX 308
S P+ V+ V + +V + C+ ++++G++ A+D HCNM+L + E +T E+ T
Sbjct: 2 SKEPMDVIR--VNLDERVYLKCKGGREIVGQLHAYDEHCNMLLSDAIETFTSVELDPTTN 59
Query: 309 XXXXXAVNKDKFISKMFLRGDSVILV 386
+KD + +F+RGD++IL+
Sbjct: 60 QEVTTITSKDSGV--VFVRGDALILL 83
>UniRef50_Q4N631 Cluster: Sm protein, putative; n=1; Theileria
parva|Rep: Sm protein, putative - Theileria parva
Length = 84
Score = 46.8 bits (106), Expect = 5e-04
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +3
Query: 186 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 293
+ + C+N ++L+GR++AFD HCNMVL V E T V
Sbjct: 22 IYLKCKNGRELVGRLQAFDEHCNMVLSEVTETITTV 57
>UniRef50_A5K5Q0 Cluster: U6 snRNA-associated Sm-like protein LSm3,
putative; n=2; Plasmodium|Rep: U6 snRNA-associated
Sm-like protein LSm3, putative - Plasmodium vivax
Length = 91
Score = 46.4 bits (105), Expect = 7e-04
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = +3
Query: 183 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNK-DKFISKMF 359
+V + C+ ++++ G++ A+D H NM+L N E + + + +V K ++ + +F
Sbjct: 21 EVFLKCKGDREIRGKLDAYDNHLNMILSNAHETYKQ---SVVENDEESVKKIERNLDMVF 77
Query: 360 LRGDSVILV 386
+RGDS+ILV
Sbjct: 78 VRGDSIILV 86
>UniRef50_UPI00015B4C2B Cluster: PREDICTED: similar to
ENSANGP00000018479; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to ENSANGP00000018479 - Nasonia
vitripennis
Length = 225
Score = 45.2 bits (102), Expect = 0.002
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Frame = +3
Query: 141 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKA----FDRHCNMVLENVKEMWT 287
GPL VL Q ++N +V + RN + G V+A FDRH N+ LE+ E+WT
Sbjct: 114 GPLGVLFQYMENRIRVKVYTRNANGIRGHVEAYVAAFDRHWNLALEDCLELWT 166
>UniRef50_UPI000021D358 Cluster: PREDICTED: similar to LSM3 homolog,
U6 small nuclear RNA associated; n=3; Homo/Pan/Gorilla
group|Rep: PREDICTED: similar to LSM3 homolog, U6 small
nuclear RNA associated - Homo sapiens
Length = 101
Score = 45.2 bits (102), Expect = 0.002
Identities = 21/68 (30%), Positives = 37/68 (54%)
Frame = +3
Query: 183 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKMFL 362
++ + RN+++L GR+ +D+H NM+L +V+E T + + + I FL
Sbjct: 27 RICVKMRNDRELRGRLHTYDQHLNMILGDVEETVTTIEIDEETYEETYESTKQNIPVFFL 86
Query: 363 RGDSVILV 386
RGD + LV
Sbjct: 87 RGDGIFLV 94
>UniRef50_Q54HH8 Cluster: Putative small nuclear
ribonucleoparticle-associated protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative small nuclear
ribonucleoparticle-associated protein - Dictyostelium
discoideum AX4
Length = 257
Score = 44.8 bits (101), Expect = 0.002
Identities = 23/93 (24%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Frame = +3
Query: 132 FSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVK----AFDRHCNMVLENVKE---MWTE 290
F+ GPLS+L +++++ +++ + R + G + AFD+H N++L +V+E +
Sbjct: 162 FTDGPLSLLKRALESKSKIKVMIRGTNCIRGYCRGYIIAFDKHMNIILRDVEEEYDLLKS 221
Query: 291 VPRTXXXXXXXAVNKDKFISKMFLRGDSVILVL 389
+P T ++ ++F++GD+V+ V+
Sbjct: 222 LPSTRNQNQPIQPKIKRYYGQLFIKGDTVVSVI 254
>UniRef50_Q6BQK4 Cluster: Similar to CA3420|CaSMX4 Candida albicans
CaSMX4 U6 snRNA-associated Sm-like protein; n=2;
Saccharomycetaceae|Rep: Similar to CA3420|CaSMX4 Candida
albicans CaSMX4 U6 snRNA-associated Sm-like protein -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 88
Score = 44.0 bits (99), Expect = 0.004
Identities = 27/93 (29%), Positives = 48/93 (51%)
Frame = +3
Query: 108 LSKIEXEXFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 287
+S + E PL ++ + + VL+ R +++ G+++ +D HCNM+L + E
Sbjct: 1 MSTVRTEQQQQEPLDLVRYQL--DELVLVKLRGAREMKGKLQGYDSHCNMILSDAVEYIY 58
Query: 288 EVPRTXXXXXXXAVNKDKFISKMFLRGDSVILV 386
+VP V K+ +F+RGDSVIL+
Sbjct: 59 DVPE-----GQEPVTKN--TDMVFVRGDSVILI 84
>UniRef50_Q6BK43 Cluster: Similar to sp|P40089 Saccharomyces
cerevisiae YER146w LSM5 Sm-like; n=1; Debaryomyces
hansenii|Rep: Similar to sp|P40089 Saccharomyces
cerevisiae YER146w LSM5 Sm-like - Debaryomyces hansenii
(Yeast) (Torulaspora hansenii)
Length = 93
Score = 44.0 bits (99), Expect = 0.004
Identities = 29/82 (35%), Positives = 43/82 (52%)
Frame = +3
Query: 144 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 323
PL ++ +S+ + QVL+ N+K+ G + FD + NMVLENV+E E P
Sbjct: 23 PLEIIDKSIGHKIQVLMT--NDKEFKGTLIGFDDYVNMVLENVEEFDNEGP--------- 71
Query: 324 AVNKDKFISKMFLRGDSVILVL 389
K K I KM L G V +++
Sbjct: 72 ---KGKVIKKMLLNGSQVAMLI 90
>UniRef50_Q9Y7M4 Cluster: Probable U6 snRNA-associated Sm-like
protein LSm3; n=8; Ascomycota|Rep: Probable U6
snRNA-associated Sm-like protein LSm3 -
Schizosaccharomyces pombe (Fission yeast)
Length = 93
Score = 44.0 bits (99), Expect = 0.004
Identities = 23/67 (34%), Positives = 35/67 (52%)
Frame = +3
Query: 186 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKMFLR 365
V + R +++L GR+ A+D H NMVL + +E+ T K +F+R
Sbjct: 22 VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVR 81
Query: 366 GDSVILV 386
GDSVIL+
Sbjct: 82 GDSVILI 88
>UniRef50_UPI00003C0461 Cluster: PREDICTED: similar to CG12924-PA;
n=1; Apis mellifera|Rep: PREDICTED: similar to
CG12924-PA - Apis mellifera
Length = 118
Score = 43.6 bits (98), Expect = 0.005
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Frame = +3
Query: 141 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKA----FDRHCNMVLENVKEMWT 287
GPL +L + ++N T++ + RN + + G V+A FD+H N+ LE+ E+WT
Sbjct: 6 GPLGMLHEYMENRTRIKVYTRNARGIRGHVEAYVAAFDKHWNLALEDCFEIWT 58
>UniRef50_Q7QZM9 Cluster: GLP_680_47464_47838; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_680_47464_47838 - Giardia lamblia
ATCC 50803
Length = 124
Score = 40.3 bits (90), Expect = 0.046
Identities = 24/87 (27%), Positives = 39/87 (44%)
Frame = +3
Query: 135 STGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXX 314
S P + + + VL+ R+ + + G +KA+DRH N+V E W E
Sbjct: 47 SDSPYAFFDEVLALRKPVLVQLRSGRFITGVLKAYDRHLNLVFSEATETWEE-------- 98
Query: 315 XXXAVNKDKFISKMFLRGDSVILVLRN 395
+ + LRGD+VI+V+ N
Sbjct: 99 --NGIEYTEERKNFMLRGDNVIMVVSN 123
>UniRef50_A7DRH4 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
ribonucleoprotein, core - Candidatus Nitrosopumilus
maritimus SCM1
Length = 80
Score = 40.3 bits (90), Expect = 0.046
Identities = 26/80 (32%), Positives = 41/80 (51%)
Frame = +3
Query: 147 LSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXA 326
+S L + K+ VL+ RNNK + G +K FD H N+ LEN +++ E P
Sbjct: 8 ISTLMTNSKDKV-VLLRLRNNKTVQGTLKDFDIHMNLTLENAEDVSEEKPNP-------- 58
Query: 327 VNKDKFISKMFLRGDSVILV 386
I K+ LRGD+++ +
Sbjct: 59 ------IGKVLLRGDNILAI 72
>UniRef50_A4FX23 Cluster: Like-Sm ribonucleoprotein, core; n=4;
Methanococcus|Rep: Like-Sm ribonucleoprotein, core -
Methanococcus maripaludis
Length = 72
Score = 39.5 bits (88), Expect = 0.081
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +3
Query: 144 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 275
PL L +S+ NT V + ++ K + GR+KA+D H N+ LEN K
Sbjct: 7 PLDALGKSI--NTNVTVFLKDGKVVKGRLKAYDLHMNVALENAK 48
>UniRef50_A0DH27 Cluster: Chromosome undetermined scaffold_50, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_50,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 85
Score = 39.1 bits (87), Expect = 0.11
Identities = 23/81 (28%), Positives = 39/81 (48%)
Frame = +3
Query: 144 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 323
PL VL S+ Q+ I RNN +L G + ++D H NM++ +E
Sbjct: 7 PLDVLKFSIAQ--QIYIKMRNNIELKGTLVSYDNHLNMIISKAEE----------TSFQE 54
Query: 324 AVNKDKFISKMFLRGDSVILV 386
+ + + ++LRGD +IL+
Sbjct: 55 GIKTKRKLDALYLRGDGIILI 75
>UniRef50_Q0UCR7 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 134
Score = 37.9 bits (84), Expect = 0.25
Identities = 14/31 (45%), Positives = 24/31 (77%)
Frame = +3
Query: 186 VLINCRNNKKLLGRVKAFDRHCNMVLENVKE 278
V++ R +++L GR+ A+D HCN+VL +V+E
Sbjct: 22 VIVKLRGDRELKGRLHAYDSHCNLVLGDVEE 52
>UniRef50_Q7QPB0 Cluster: GLP_122_3813_3433; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_122_3813_3433 - Giardia lamblia ATCC
50803
Length = 126
Score = 37.5 bits (83), Expect = 0.33
Identities = 24/85 (28%), Positives = 43/85 (50%)
Frame = +3
Query: 138 TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXX 317
+ PL +L S+++ VL+ +NN + G + +FD H N++L N +E
Sbjct: 51 SNPLYLLKTSLEDRVSVLL--QNNSSITGLLASFDEHMNLILINAEE------------- 95
Query: 318 XXAVNKDKFISKMFLRGDSVILVLR 392
+ ++F + +RGDS+I V R
Sbjct: 96 -TGHSLNRFFPLLVIRGDSIIFVTR 119
>UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm3;
n=2; Saccharomyces cerevisiae|Rep: U6 snRNA-associated
Sm-like protein LSm3 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 89
Score = 37.5 bits (83), Expect = 0.33
Identities = 23/81 (28%), Positives = 42/81 (51%)
Frame = +3
Query: 144 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 323
PL +L ++ + +V I R + L+G ++AFD HCN+VL + E ++
Sbjct: 4 PLDLLKLNL--DERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELS---- 57
Query: 324 AVNKDKFISKMFLRGDSVILV 386
++ +F+RGD+V L+
Sbjct: 58 --ESERRCEMVFIRGDTVTLI 76
>UniRef50_Q9FI15 Cluster: Similarity to small nuclear
ribonucleoprotein; n=6; Viridiplantae|Rep: Similarity to
small nuclear ribonucleoprotein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 254
Score = 37.1 bits (82), Expect = 0.43
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = +3
Query: 177 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKM 356
N ++ + ++ ++L+G+ AFDRH N+VL + +E P + + + +
Sbjct: 14 NYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEEREERRTLGLV 73
Query: 357 FLRGDSVI 380
LRG+ VI
Sbjct: 74 LLRGEEVI 81
>UniRef50_Q7S1Q3 Cluster: Putative uncharacterized protein
NCU09512.1; n=1; Neurospora crassa|Rep: Putative
uncharacterized protein NCU09512.1 - Neurospora crassa
Length = 168
Score = 36.3 bits (80), Expect = 0.76
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +3
Query: 186 VLINCRNNKKLLGRVKAFDRHCNMVLENVKE 278
V + R +++L GR+ A+D HCN+VL V+E
Sbjct: 26 VCVKLRGDRELKGRLHAYDSHCNLVLGEVEE 56
>UniRef50_Q7PT02 Cluster: ENSANGP00000018479; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000018479 - Anopheles gambiae
str. PEST
Length = 257
Score = 35.9 bits (79), Expect = 1.00
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +3
Query: 117 IEXEXFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKA----FDRHCNMVLENVKEMW 284
I E GPL L + ++ +V ++ R K + G V FD+H N+ L +V E W
Sbjct: 115 IRLEKGFEGPLGQLQRWMEGRNRVRVSIRKQKGVRGHVSGVLELFDKHWNLALSDVCETW 174
Query: 285 T 287
T
Sbjct: 175 T 175
>UniRef50_Q2FT45 Cluster: Like-Sm ribonucleoprotein, core; n=3;
Methanomicrobiales|Rep: Like-Sm ribonucleoprotein, core
- Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 80
Score = 35.5 bits (78), Expect = 1.3
Identities = 23/85 (27%), Positives = 43/85 (50%)
Frame = +3
Query: 144 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 323
P+ +L Q V N VLI+ + +++ G ++ +D H N+VL+ +E+
Sbjct: 10 PMDILDQ-VLNRQPVLISLKGGREIKGVLQGYDVHMNLVLDKAEEI-------------- 54
Query: 324 AVNKDKFISKMFLRGDSVILVLRNP 398
+ + I + +RGD+VI + NP
Sbjct: 55 VQGQAQSIGTLIIRGDNVIYISPNP 79
>UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
ribonucleoprotein, core - Candidatus Nitrosopumilus
maritimus SCM1
Length = 78
Score = 35.1 bits (77), Expect = 1.7
Identities = 24/84 (28%), Positives = 45/84 (53%)
Frame = +3
Query: 147 LSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXA 326
+ VL +S+ N VLI + NK + G + FD+H N++L++ + E+P A
Sbjct: 7 VKVLDESI--NQIVLIKLKGNKTIRGNLLGFDQHMNLLLDSSE----EIP---------A 51
Query: 327 VNKDKFISKMFLRGDSVILVLRNP 398
+ K + + +RGD+V+++ P
Sbjct: 52 EGEAKGLGSIVVRGDNVVMISPPP 75
>UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Methanobacterium thermoautotrophicum
Length = 81
Score = 34.7 bits (76), Expect = 2.3
Identities = 16/46 (34%), Positives = 29/46 (63%)
Frame = +3
Query: 144 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 281
PL L S+ N+ V+I + +++ G +K+FD H N+VL + +E+
Sbjct: 14 PLDALGNSL--NSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEEL 57
>UniRef50_Q5KN63 Cluster: Sm-like protein, putative; n=1;
Filobasidiella neoformans|Rep: Sm-like protein, putative
- Cryptococcus neoformans (Filobasidiella neoformans)
Length = 95
Score = 34.3 bits (75), Expect = 3.0
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +3
Query: 183 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKMFL 362
+VLI R ++ + G + A+D H N+V+ +E V T + + +F+
Sbjct: 23 RVLIKLRGDRIVTGVLHAYDAHMNVVISQAEESIHVVDVTEEGQPLPPRIERRTAEMLFV 82
Query: 363 RGDSVILV 386
RGD VIL+
Sbjct: 83 RGDGVILL 90
>UniRef50_Q59ZT4 Cluster: Potential RNA processing complex subunit
Lsm5; n=2; Saccharomycetales|Rep: Potential RNA
processing complex subunit Lsm5 - Candida albicans
(Yeast)
Length = 119
Score = 34.3 bits (75), Expect = 3.0
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +3
Query: 144 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 281
PL V+ +SV +VL+ +K+ G++ FD + NMVLE+V E+
Sbjct: 54 PLEVIDRSVGKRVRVLMT--GDKEFNGKLIGFDDYVNMVLEDVTEV 97
>UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog;
n=5; Thermoproteaceae|Rep: Small nuclear
ribonucleoprotein homolog - Pyrobaculum aerophilum
Length = 80
Score = 34.3 bits (75), Expect = 3.0
Identities = 12/33 (36%), Positives = 26/33 (78%)
Frame = +3
Query: 183 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 281
QVL+ R++ ++ G +++FD+H N++LE+ +E+
Sbjct: 23 QVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI 55
>UniRef50_A3BPN8 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 111
Score = 33.9 bits (74), Expect = 4.0
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Frame = +3
Query: 135 STGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXX 314
ST ++TQ +K Q+ + + + ++ GR+ FD + N+VL++ +E+
Sbjct: 3 STKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEI----------- 51
Query: 315 XXXAVNKD--KFISKMFLRGDSVILVLRNPLATAA 413
V KD K + ++ L+GD++ L++ + A
Sbjct: 52 ---NVKKDTRKSLGRILLKGDNITLMMNTSIRDMA 83
>UniRef50_Q8IL38 Cluster: Small nuclear ribonuclear protein,
putative; n=3; Plasmodium|Rep: Small nuclear ribonuclear
protein, putative - Plasmodium falciparum (isolate 3D7)
Length = 101
Score = 33.5 bits (73), Expect = 5.3
Identities = 14/45 (31%), Positives = 31/45 (68%)
Frame = +3
Query: 144 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 278
PL+++ + + +++ I + +K+++G++ FD + NMVLE+V E
Sbjct: 12 PLALMDKCI--GSKIWIMMKGDKEIVGKLVGFDEYVNMVLEDVTE 54
>UniRef50_Q0UX37 Cluster: Predicted protein; n=1; Phaeosphaeria
nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 80
Score = 33.5 bits (73), Expect = 5.3
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 180 TQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 284
+Q+ + K+ G++ FD + NMVLE V E+W
Sbjct: 27 SQIWVIMNGGKEFTGKLVGFDDYVNMVLEEVTEIW 61
>UniRef50_Q2QT80 Cluster: Retrotransposon protein, putative,
unclassified; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Retrotransposon protein, putative,
unclassified - Oryza sativa subsp. japonica (Rice)
Length = 421
Score = 33.1 bits (72), Expect = 7.0
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = -2
Query: 380 DHRITAEEHFGDEFVLVYSFALLSFASSRYLSPH---FLNILQYHVTMPVESLHSTQKFL 210
D +TA E + L S LLSFA + + P F ++L +H + +LH T +
Sbjct: 31 DAAVTATESWLRPRYLERSVHLLSFAMAGLIPPFTSFFHDVLDFH---EIHTLHLTPNAV 87
Query: 209 IVTAIYQNLC 180
I+ AI+ +LC
Sbjct: 88 IILAIFVHLC 97
>UniRef50_P57670 Cluster: Putative snRNP Sm-like protein; n=4;
Thermoplasmatales|Rep: Putative snRNP Sm-like protein -
Thermoplasma acidophilum
Length = 83
Score = 33.1 bits (72), Expect = 7.0
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = +3
Query: 144 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 281
P+ VL ++ N VLI+ + N++ G ++ +D + N+VL+N E+
Sbjct: 10 PMDVLKSALSRN--VLIDVKGNREYSGILEGYDVYMNIVLQNASEI 53
>UniRef50_A0BES6 Cluster: Chromosome undetermined scaffold_102,
whole genome shotgun sequence; n=5; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_102,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 1272
Score = 32.7 bits (71), Expect = 9.3
Identities = 18/68 (26%), Positives = 37/68 (54%)
Frame = -1
Query: 567 IELQNQRTNTVLKVIQFCKTVLLQFKE*TSKLLISWIFLFINT*TNYCITSLQL*QEDSL 388
I+ N N ++ IQ C T+ +KE S +++ + +F++ N + Q+ + L
Sbjct: 211 IQAPNNVVNMIIIPIQLCITLTYIYKEIGSSVIVGIVIIFLSILQNNYV-GKQIVKAQKL 269
Query: 387 VLRSQNHR 364
VL+S+++R
Sbjct: 270 VLKSKDNR 277
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 622,548,210
Number of Sequences: 1657284
Number of extensions: 11909890
Number of successful extensions: 26380
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 25453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26356
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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