Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_J19
(717 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0462 - 14316486-14316602,14316689-14316793,14318406-143184... 159 3e-39
01_07_0305 - 42631214-42631330,42631423-42631527,42633208-426332... 119 3e-27
01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297 50 2e-06
07_01_0479 + 3606663-3607448 37 0.018
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296... 34 0.13
03_05_1156 - 30814037-30814190,30814277-30815166 31 0.69
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962... 29 3.7
08_01_0975 + 9819387-9821512,9821768-9821910,9822185-9822349,982... 28 8.5
>05_03_0462 -
14316486-14316602,14316689-14316793,14318406-14318486,
14318593-14318610
Length = 106
Score = 159 bits (385), Expect = 3e-39
Identities = 77/96 (80%), Positives = 82/96 (85%), Gaps = 1/96 (1%)
Frame = +3
Query: 114 KIEXEXFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 293
K E E FSTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEV
Sbjct: 10 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 69
Query: 294 PRT-XXXXXXXAVNKDKFISKMFLRGDSVILVLRNP 398
P+T VNKD+FISKMFLRGDSVI+VLRNP
Sbjct: 70 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 105
>01_07_0305 -
42631214-42631330,42631423-42631527,42633208-42633216,
42635198-42636142,42636349-42636450,42637210-42637302
Length = 456
Score = 119 bits (286), Expect = 3e-27
Identities = 56/79 (70%), Positives = 65/79 (82%), Gaps = 1/79 (1%)
Frame = +3
Query: 165 SVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRT-XXXXXXXAVNKDK 341
S + +VLINC+NNKKLLGRV+AFD HCNMVLENV+EMWTEVP+T VNKD+
Sbjct: 377 SCLGDIKVLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNKDR 436
Query: 342 FISKMFLRGDSVILVLRNP 398
FISKMFLRGDSVI+VL+NP
Sbjct: 437 FISKMFLRGDSVIIVLKNP 455
>01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297
Length = 104
Score = 49.6 bits (113), Expect = 2e-06
Identities = 31/97 (31%), Positives = 53/97 (54%)
Frame = +3
Query: 120 EXEXFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPR 299
E E PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 11 EEEIAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEI 68
Query: 300 TXXXXXXXAVNKDKFISKMFLRGDSVILVLRNPLATA 410
+ I +F+RGD VILV PL TA
Sbjct: 69 DDETYEEIVRTTKRTIPFLFVRGDGVILV-SPPLRTA 104
>07_01_0479 + 3606663-3607448
Length = 261
Score = 36.7 bits (81), Expect = 0.018
Identities = 17/68 (25%), Positives = 39/68 (57%)
Frame = +3
Query: 177 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKM 356
N ++ + ++ ++L+G+ AFDRH N+VL + +E + ++P + + + + +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPSKSSKTTGEREERRTLGLL 72
Query: 357 FLRGDSVI 380
LRG+ V+
Sbjct: 73 LLRGEEVV 80
>08_01_0328 +
2959014-2959055,2959336-2959398,2960871-2960949,
2961038-2961083,2961566-2961671
Length = 111
Score = 33.9 bits (74), Expect = 0.13
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Frame = +3
Query: 135 STGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXX 314
ST ++TQ +K Q+ + + + ++ GR+ FD + N+VL++ +E+
Sbjct: 3 STKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEI----------- 51
Query: 315 XXXAVNKD--KFISKMFLRGDSVILVLRNPLATAA 413
V KD K + ++ L+GD++ L++ + A
Sbjct: 52 ---NVKKDTRKSLGRILLKGDNITLMMNTSIRDMA 83
>03_05_1156 - 30814037-30814190,30814277-30815166
Length = 347
Score = 31.5 bits (68), Expect = 0.69
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -1
Query: 621 VNLIQFQYIKISSLFFYYI--ELQNQRTNTVLKVIQFC 514
V L+ F Y+ + L FY + E+ +RTN VL + FC
Sbjct: 67 VGLLLFIYLLVGVLAFYAVMDEISGKRTNRVLDALYFC 104
>05_04_0169 -
18694418-18694453,18694516-18694627,18696095-18696243,
18696980-18697033,18697110-18697222,18697323-18697374
Length = 171
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +3
Query: 180 TQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 278
+++ + + +K+L+G + FD + NMVLE+V E
Sbjct: 90 SKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTE 122
>08_01_0975 +
9819387-9821512,9821768-9821910,9822185-9822349,
9822382-9822419
Length = 823
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -3
Query: 286 VHISLTFSNTMLQCRSKAFTLPKS 215
+H L F TMLQC F PKS
Sbjct: 563 LHTFLVFDTTMLQCSWSCFVPPKS 586
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,002,763
Number of Sequences: 37544
Number of extensions: 298525
Number of successful extensions: 554
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -