Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_J17
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              23   3.1  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   3.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.3  

>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +3

Query: 63  NKIFNGVMDSEFKNTMYYYVTLLCMFNILFVNVN 164
           ++++NG ++ E +N   Y   ++  FN++  N N
Sbjct: 45  DEVYNGNVNVEDENVQSYVECMMKKFNVVDENGN 78


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 186 RACIIGAGYSGLGAARYMKQYHVNFTVFE 272
           R CI+G+G  G   A+ +     NF+ FE
Sbjct: 6   RICIVGSGNWGSTIAKIIGINAANFSNFE 34


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 279 RNFGGTWHFDPH 314
           +N+GG +H D H
Sbjct: 268 KNYGGVYHLDNH 279


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -2

Query: 232 RAAPKPEYPAPMMHALEVFRVNPFT 158
           ++ P P+YP+   H L+   +  +T
Sbjct: 435 QSQPSPQYPSTSSHILQQPSIRTYT 459


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 687 CCLQMFXFRRTWATQE 640
           CC      RR+W T+E
Sbjct: 344 CCKTRIIGRRSWVTRE 359


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 190 ALEVFRVNPFTLTKRILNMHN 128
           ++E F+  P TLT+ +LN HN
Sbjct: 630 SMESFK--PPTLTESLLNRHN 648


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 83  NTIKYFIKKIYKLNECITCRPAT 15
           N  +Y I+    + +CI+CR  T
Sbjct: 611 NCTQYQIRDHKDVTQCISCRQGT 633


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,717
Number of Sequences: 438
Number of extensions: 5217
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)