Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_J16
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0336 + 28033315-28033365,28033580-28033585,28033798-280338...    31   0.93 
09_03_0157 + 12860078-12860390,12860474-12860622,12860967-12861128     28   6.5  
06_03_0793 + 24662506-24663512,24664470-24664787,24664996-246653...    28   6.5  
09_04_0489 - 18031187-18031579,18032033-18034030,18034102-180342...    27   8.7  

>02_05_0336 +
           28033315-28033365,28033580-28033585,28033798-28033884,
           28034741-28034830,28035736-28037778,28037916-28038062,
           28038148-28038560,28038656-28038755
          Length = 978

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 409 SRSIASPPHTRVTRWKTISCPDSLRAL 329
           S+++A P H R  RW  + CP   R +
Sbjct: 670 SQNLAVPDHVRTLRWGLVECPSQFRCV 696


>09_03_0157 + 12860078-12860390,12860474-12860622,12860967-12861128
          Length = 207

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -3

Query: 303 SWKFYQGSIPEE*HASQYRQVNRKTRHKHLSTQIHK*KVRLSALLSL 163
           SW + Q    +  + S   ++NRK    HLS  +H  K++L   + +
Sbjct: 160 SWNYLQKKAEKIVNQSNQSRINRKESLFHLSCNLHGEKLKLQCAIGV 206


>06_03_0793 +
           24662506-24663512,24664470-24664787,24664996-24665323,
           24665465-24665887,24665960-24666252,24666332-24666605,
           24666856-24667358,24667464-24667785,24667875-24668220,
           24668339-24668997,24669524-24669625,24669656-24670052,
           24670155-24670270,24670360-24670386
          Length = 1704

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 198 YESGWKDACAVFFYSLVCIVMHAILQEYFLDKISKKFHLSK 320
           + SG K+   +FF  L+  V+  +LQ  FL K++    L K
Sbjct: 375 FRSGLKEEIGLFFPMLILRVLENVLQPSFLQKMTVLNFLEK 415


>09_04_0489 -
           18031187-18031579,18032033-18034030,18034102-18034234,
           18035360-18036108
          Length = 1090

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 1/111 (0%)
 Frame = +3

Query: 99  QSTSPIASLFISLHHNVSGVEPTREAPKGEPFTYESGWK-DACAVFFYSLVCIVMHAILQ 275
           QS  P+ S+  S HH     +P R+  K E     +G +   C + F      V H +  
Sbjct: 308 QSAPPVTSVPFSSHHG----DPQRQLDKNETQVEANGKECQKCNLTFQDQSAYVQHQL-- 361

Query: 276 EYFLDKISKKFHLSKSRLSALNESGQLIVFHLVTLVWGGDAILREGFIFNI 428
                     FH  K++   +N+SG++     VT+V     I  E  + NI
Sbjct: 362 ---------SFHQRKAKRRKVNKSGEVGANKNVTIVTQECHITSEDKLGNI 403


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,535,625
Number of Sequences: 37544
Number of extensions: 409370
Number of successful extensions: 988
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)