Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_J16
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   0.43 
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     25   0.43 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.0  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 22/89 (24%), Positives = 38/89 (42%)
 Frame = +3

Query: 18  FSHXFVIQNHADIVSCVVMVFLVGLMVQSTSPIASLFISLHHNVSGVEPTREAPKGEPFT 197
           F+H     NH  ++ CV    + G++V S    A  +  L   V G   +        + 
Sbjct: 297 FAHPREEFNHWTVMRCV-QAMIAGIVVISAG--ADAYPPLAAIVLGAIGSIVFYIISRYV 353

Query: 198 YESGWKDACAVFFYSLVCIVMHAILQEYF 284
           + S  +D C +    LVC ++ +IL  +F
Sbjct: 354 FRSALEDYCNIVATHLVCGILGSILVPFF 382



 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 207 GWKDACAVFFYSLVCIVMH 263
           GW+  C +   +LV I+M+
Sbjct: 398 GWQMICLIVVIALVSIIMY 416


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 83  GWIDGTVYKSHCKLVHQFTPQCQWS 157
           G I+    K   K   +F P+C+WS
Sbjct: 134 GNIEAVTTKEKAKFPQEFFPECKWS 158


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 385 HTRVTRWKTISCPDSLRAL 329
           H R+T    +S PDS+  L
Sbjct: 604 HNRITELSPLSVPDSVELL 622


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 74  GFPGWIDGTVYKSHCKLVHQFTP 142
           G   W    VYKS C +  +F P
Sbjct: 139 GLVVWQPPAVYKSSCSIDVEFFP 161


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 126 TSLQWDL*TVPSIQPGK 76
           TS++WD+  VP+++  K
Sbjct: 202 TSVEWDILEVPAVRNEK 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,391
Number of Sequences: 438
Number of extensions: 4695
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)