Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_J12
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21309-2|AAN73882.1|  515|Caenorhabditis elegans Hypothetical pr...   208   3e-54
AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin, mu/m...    37   0.012
U53340-2|AAA96207.1|  142|Caenorhabditis elegans Ap-2 small chai...    33   0.15 
AF016440-4|AAB65902.1|  157|Caenorhabditis elegans Adaptin, smal...    32   0.35 
AF099001-8|AAP13778.1|  435|Caenorhabditis elegans Dumpy : short...    30   1.9  
AF099001-7|AAP13777.1|  441|Caenorhabditis elegans Dumpy : short...    30   1.9  
U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF125965-1|AAL38962.1|  339|Caenorhabditis elegans Hypothetical ...    29   4.3  
AF039044-13|AAG24128.2|  435|Caenorhabditis elegans Hypothetical...    28   7.6  

>U21309-2|AAN73882.1|  515|Caenorhabditis elegans Hypothetical
           protein C13B9.3 protein.
          Length = 515

 Score =  208 bits (508), Expect = 3e-54
 Identities = 103/186 (55%), Positives = 134/186 (72%), Gaps = 6/186 (3%)
 Frame = +2

Query: 95  LVLIAATVCTXSGKALVSRQFV-EMTKARIEGLLAAFPKLM-----TGGRQHTFVETESV 256
           +VLIAA + + +GK LV+RQFV +M ++R+EGL+ AFPKL+        RQHTFVET+SV
Sbjct: 1   MVLIAACILSKTGKLLVARQFVNDMMRSRLEGLVDAFPKLIGNEKEAATRQHTFVETDSV 60

Query: 257 RYVYQPLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFD 436
           RYVY PLD +Y++L+TTK SNILEDLETLRLF RV+PEYC    E E+L   F+L+FAFD
Sbjct: 61  RYVYHPLDNIYLVLVTTKNSNILEDLETLRLFVRVIPEYCRSNEEKEILAHDFDLIFAFD 120

Query: 437 EIVALGYRESVNLAQVRSFVEMDSHEEKIYQAVRQTQXXXXXXXXXXXXXXLQRERLEAA 616
           E+V LGYRESVNLAQ+R+F EMDSHEE+++  +++ Q              L+R + EA 
Sbjct: 121 EVVTLGYRESVNLAQIRTFTEMDSHEERVFMQIKEAQEKAAKQAMAEKAKELKRAQKEAL 180

Query: 617 KRGQPP 634
            RG  P
Sbjct: 181 SRGLKP 186


>AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin,
           mu/medium chain (clathrinassociated complex) protein 1
           protein.
          Length = 426

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 1/123 (0%)
 Frame = +2

Query: 131 GKALVSRQFV-EMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVYQPLDKLYMLLITT 307
           G  ++SR +  ++  + IE  +    +    G     +  + + Y Y     +Y++ I+ 
Sbjct: 13  GNVVISRNYRGDVDMSCIEKFMPLLVEKEDEGSASPVLVHQGISYTYIKYMNVYLVTISK 72

Query: 308 KASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRESVNLAQVR 487
           K +N++  L  L     V  EY   L E  V +    +   FDE++  GY ++     ++
Sbjct: 73  KNTNVILVLSALYKIVEVFCEYFKTLEEEAVRDNFVIIYELFDEMLDFGYPQTTESKILQ 132

Query: 488 SFV 496
            F+
Sbjct: 133 EFI 135


>U53340-2|AAA96207.1|  142|Caenorhabditis elegans Ap-2 small chain
           (clathrin associatedcomplex) protein 2 protein.
          Length = 142

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
 Frame = +2

Query: 227 QHT-FVETESVRYVYQPLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVL 403
           +HT FVE  + + VY+    LY  +      N L  LE +  F  V+ EY   + E +++
Sbjct: 45  KHTNFVEFRNFKIVYRRYAGLYFCICVDITDNNLYYLEAIHNFVEVLNEYFHNVCELDLV 104

Query: 404 NQAFNLLFAFDEIVALG-YRESVNLAQVRSFVEMDSHE 514
              + +    DE+   G  RE+     ++  + + S E
Sbjct: 105 FNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLTSLE 142


>AF016440-4|AAB65902.1|  157|Caenorhabditis elegans Adaptin, small
           chain (clathrinassociated complex) protein 1 protein.
          Length = 157

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 25/116 (21%), Positives = 49/116 (42%)
 Frame = +2

Query: 137 ALVSRQFVEMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVYQPLDKLYMLLITTKAS 316
           A   +Q  ++ +  I  +LA  PK+        F+E + ++ VY+    LY      +  
Sbjct: 22  AYPDKQKKKICRELITQILARKPKMCA------FLEYKDLKVVYKRYASLYFCCAIEQND 75

Query: 317 NILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRESVNLAQV 484
           N L  LE +  +  ++ +Y   + E +++       F  DE +  G  +  +  QV
Sbjct: 76  NELITLEVIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLAGEIQETSKKQV 131


>AF099001-8|AAP13778.1|  435|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 23, isoform b protein.
          Length = 435

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/71 (22%), Positives = 34/71 (47%)
 Frame = +2

Query: 284 LYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRE 463
           +++  +T +  N     E L+ F+  +  Y  +L E  V N    +    DEI+  GY +
Sbjct: 63  VWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQ 122

Query: 464 SVNLAQVRSFV 496
           + +   +++F+
Sbjct: 123 NTDPGVLKTFI 133


>AF099001-7|AAP13777.1|  441|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 23, isoform a protein.
          Length = 441

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/71 (22%), Positives = 34/71 (47%)
 Frame = +2

Query: 284 LYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRE 463
           +++  +T +  N     E L+ F+  +  Y  +L E  V N    +    DEI+  GY +
Sbjct: 63  VWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQ 122

Query: 464 SVNLAQVRSFV 496
           + +   +++F+
Sbjct: 123 NTDPGVLKTFI 133


>U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical
           protein B0361.8 protein.
          Length = 470

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = +2

Query: 254 VRYVYQPLDKLYMLLITTKASNILEDLETLRLFS--RVVPEYCVQLTETEVLN 406
           V  VY P D    L I + A ++LED +T+RL S  ++ PE   +L + EVL+
Sbjct: 252 VSIVYPPCDVEAFLNIESVAESLLEDTKTVRLLSVGQIRPEKNHKL-QLEVLH 303


>AF125965-1|AAL38962.1|  339|Caenorhabditis elegans Hypothetical
           protein H43I07.3 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +2

Query: 182 EGLLAAFPKLMTGGRQHTFVETESVRYVYQPLDKL-YMLLITTKASNILEDLET-LRLFS 355
           E L  +FP ++   R H   E+ +VR V + +  L + LL+ T A+  ++D +   +LF+
Sbjct: 201 EPLDESFPAVIVASRAHLEAESMAVRSVPRTILMLGFHLLVYTFAARTIKDTQCGFKLFT 260

Query: 356 RVV 364
           R +
Sbjct: 261 RSI 263


>AF039044-13|AAG24128.2|  435|Caenorhabditis elegans Hypothetical
           protein F48G7.12 protein.
          Length = 435

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 287 YMLLITTKASNILEDLETLRLFSR 358
           Y  ++T KA +++EDLE   L+SR
Sbjct: 399 YQEILTEKAEHLMEDLERWHLYSR 422


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,216,930
Number of Sequences: 27780
Number of extensions: 304198
Number of successful extensions: 828
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)