Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_J07
(625 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
M29494-1|AAA27729.1| 74|Apis mellifera protein ( Bee homeobox-... 23 1.8
AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamat... 23 2.4
AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamat... 23 2.4
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 23 3.2
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 4.2
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 22 4.2
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 22 5.6
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 22 5.6
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 22 5.6
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 22 5.6
S76959-1|AAB33934.1| 85|Apis mellifera olfactory receptor prot... 21 7.4
AF205594-1|AAQ13840.1| 156|Apis mellifera acid phosphatase prec... 21 7.4
>M29494-1|AAA27729.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H15. ).
Length = 74
Score = 23.4 bits (48), Expect = 1.8
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -2
Query: 228 QKAHSAYPKFQPLVLQWSFHYPFHI 154
++ Y +FQ L L+ FHY ++
Sbjct: 9 RRGRQTYTRFQTLELEKEFHYNHYL 33
>AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamate
receptor 1 protein.
Length = 843
Score = 23.0 bits (47), Expect = 2.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 599 GXYSGVFLALISLLCMFNIP 540
G YS V L + +LL +F+IP
Sbjct: 76 GSYSSVSLQVANLLRLFHIP 95
>AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamate
receptor protein.
Length = 933
Score = 23.0 bits (47), Expect = 2.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 599 GXYSGVFLALISLLCMFNIP 540
G YS V L + +LL +F+IP
Sbjct: 166 GSYSSVSLQVANLLRLFHIP 185
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 22.6 bits (46), Expect = 3.2
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +1
Query: 115 VWNSISTFLIKLLNMERIMEAPLKNKWL 198
+W+ ST++ K+ N + + L+N WL
Sbjct: 318 IWDYDSTYIPKVKNKKAGSKHLLQNTWL 345
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 22.2 bits (45), Expect = 4.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 191 LFFNGASIILSIFNSFIKNVLILFHTS 111
LF N AS+ + IFN I +L++ H S
Sbjct: 268 LFLNMASVFMRIFN-LICMMLLIGHWS 293
Score = 21.0 bits (42), Expect = 9.8
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +3
Query: 372 LIKLASTWEGIQAAKELEKK 431
L++ S WE + + L+KK
Sbjct: 225 LVRYVSQWEEVYILQNLQKK 244
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 22.2 bits (45), Expect = 4.2
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -1
Query: 247 IFNISHPKSTLSISKVSATCSSMELPLS 164
++ ISHPK L + K E P+S
Sbjct: 327 VYAISHPKYRLELQKRLPWLELQEKPIS 354
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 21.8 bits (44), Expect = 5.6
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 251 NNF*YFTPKKHTQHIQSFSHLFFNGASIILSI-FNSFI 141
+NF TP++ Q I S + F A II +I + SFI
Sbjct: 430 HNFTTMTPQEIAQWIDRRSRIVFPVAFIIFNILYWSFI 467
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.8 bits (44), Expect = 5.6
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = -2
Query: 57 SWPQNLQYLPQXVECC 10
S P NLQY P + C
Sbjct: 137 SCPMNLQYFPMDRQLC 152
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.8 bits (44), Expect = 5.6
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = -2
Query: 57 SWPQNLQYLPQXVECC 10
S P NLQY P + C
Sbjct: 137 SCPMNLQYFPMDRQLC 152
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 21.8 bits (44), Expect = 5.6
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = -2
Query: 57 SWPQNLQYLPQXVECC 10
S P NLQY P + C
Sbjct: 76 SCPMNLQYFPMDRQLC 91
>S76959-1|AAB33934.1| 85|Apis mellifera olfactory receptor
protein.
Length = 85
Score = 21.4 bits (43), Expect = 7.4
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = -1
Query: 250 IIFNISHPKSTLSISKVSATCSS 182
I+FNI H S K TC S
Sbjct: 33 ILFNILHMSSAEGWFKAIGTCGS 55
>AF205594-1|AAQ13840.1| 156|Apis mellifera acid phosphatase
precursor protein.
Length = 156
Score = 21.4 bits (43), Expect = 7.4
Identities = 7/27 (25%), Positives = 17/27 (62%)
Frame = +1
Query: 100 YSLLLVWNSISTFLIKLLNMERIMEAP 180
Y + L +NS+ F + +++++E+P
Sbjct: 21 YFIFLYFNSLVRFRRFTIELDKVLESP 47
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,320
Number of Sequences: 438
Number of extensions: 3729
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -