Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_J03
         (559 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0058 + 438000-438230,438847-438902,440003-440117,440314-44...    30   1.1  
09_04_0385 + 17167174-17167440,17173321-17173962                       30   1.1  
02_05_0516 + 29694631-29695182                                         30   1.1  
08_02_1239 + 25491034-25492378,25493719-25494575                       29   3.3  
02_04_0150 - 20215070-20217577                                         28   4.4  
12_02_0874 + 23915303-23915543,23915630-23915713,23915797-239163...    28   5.8  
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921...    27   7.7  

>11_01_0058 +
           438000-438230,438847-438902,440003-440117,440314-440424,
           442331-442518,442957-443013,443109-443268,443368-443436,
           443580-443699
          Length = 368

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +2

Query: 137 GDYPKEYNPAVHGPYDPARYYGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGA 295
           GD+   Y P     Y P  Y+G+P  P + L+   +G        TPS V  A
Sbjct: 15  GDHYPYYKPTSRPHYQPPHYHGQPAAPPAPLQQQHLGP----HGVTPSTVGVA 63


>09_04_0385 + 17167174-17167440,17173321-17173962
          Length = 302

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 322 LPSPPGSTESSGHGRRSLAAATEPRTD 242
           LP  P +T SSG+ R S +A++ PR D
Sbjct: 146 LPPEPSATTSSGNDRSSSSASSPPRAD 172


>02_05_0516 + 29694631-29695182
          Length = 183

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +2

Query: 251 WFGRRSKT-PS--AVAGAFSRAWWRWQHKYVQPKKVGMA 358
           W  RRSK+ PS  A AG   + WW W   ++  KK G A
Sbjct: 67  WAFRRSKSAPSLGAFAGGPLKRWWDWGVGWLMSKKPGFA 105


>08_02_1239 + 25491034-25492378,25493719-25494575
          Length = 733

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 27/63 (42%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -1

Query: 370 LVEWSHAN--LLRLYVLMLPSPPGSTESSGHGRRSLAAATEPRTDFVQLQLAEWSIRFSI 197
           LV WSH N  LL +Y  M   P GS +    G    AAA E R       L  W +R+SI
Sbjct: 447 LVGWSHDNGELLLVYEYM---PNGSLDQHLFG----AAAAERR-------LLGWDLRYSI 492

Query: 196 VAG 188
           VAG
Sbjct: 493 VAG 495


>02_04_0150 - 20215070-20217577
          Length = 835

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 22/83 (26%), Positives = 39/83 (46%)
 Frame = -1

Query: 346 LLRLYVLMLPSPPGSTESSGHGRRSLAAATEPRTDFVQLQLAEWSIRFSIVAGRIVRPMY 167
           LLR  V  + +P G   S G GR SL  A E     + +      + +S V G  V+ ++
Sbjct: 130 LLRKKVFAMVAPAGDAFSRGVGRYSLFDAVEDAARMIWIGY----LVYSYVHGFAVKSLF 185

Query: 166 SRIILLGVITESHIFRKARCTFL 98
              ++L + + + + ++A C  L
Sbjct: 186 ---VILWIFSVAKLCKRAACIHL 205


>12_02_0874 +
           23915303-23915543,23915630-23915713,23915797-23916312,
           23916426-23916482,23916630-23916802,23916886-23917014,
           23917102-23917296,23917381-23917503,23918171-23918284
          Length = 543

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 246 VRGSVAAARLRLPWPELSVEPGGDGNISTYNLRRLAWLHS 365
           VR S A +R   P   + VE   DG+  T++L +L W HS
Sbjct: 34  VRASDAGSRAA-PGEVVHVEAKSDGSNVTFHLTQLQWHHS 72


>12_02_0792 -
           23191120-23191313,23191419-23191775,23192027-23192108,
           23192186-23193097,23193190-23193346,23193540-23193694,
           23194667-23194819,23195334-23195627,23195711-23195896,
           23196062-23196662,23196868-23196992,23197101-23197197,
           23197299-23197411,23198129-23198233
          Length = 1176

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +2

Query: 167 VHGPYDPARYYGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQPKK 346
           +HG         KPD P   L LN+ GS+    SK     +   + AWW + ++  +   
Sbjct: 633 LHGASSTIIKNHKPDNPIPPLTLNQAGSFTVCHSKAWD--SKIVTSAWWVYPYQVSKTAP 690

Query: 347 VG 352
            G
Sbjct: 691 TG 692


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,324,230
Number of Sequences: 37544
Number of extensions: 332982
Number of successful extensions: 1027
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)