Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_J02
(769 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49130-1|CAA88965.2| 708|Caenorhabditis elegans Hypothetical pr... 32 0.39
Z11505-2|CAA77585.1| 418|Caenorhabditis elegans Hypothetical pr... 32 0.39
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 31 0.90
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 31 0.90
Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical pr... 30 2.1
AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical ... 30 2.1
AC006834-8|AAF40006.1| 865|Caenorhabditis elegans Hypothetical ... 29 2.8
AL031254-1|CAA20282.1| 395|Caenorhabditis elegans Hypothetical ... 29 3.6
Z99169-2|CAB16307.1| 1334|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z82073-4|CAB04927.2| 208|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical pr... 28 6.4
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 28 6.4
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 28 6.4
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 28 6.4
AF039053-3|AAC25880.2| 349|Caenorhabditis elegans Hypothetical ... 28 6.4
Z81581-6|CAB04666.1| 679|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z81581-5|CAB04667.2| 646|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z81051-8|CAB02869.1| 425|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z69716-2|CAA93527.1| 474|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z68115-2|CAA92167.1| 914|Caenorhabditis elegans Hypothetical pr... 28 8.4
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr... 28 8.4
>Z49130-1|CAA88965.2| 708|Caenorhabditis elegans Hypothetical
protein T06D8.2 protein.
Length = 708
Score = 32.3 bits (70), Expect = 0.39
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = +2
Query: 203 DFSDAESDDDIEKVQSIRNFLSEPLSNVETSFSPQIYQYSSPVNEHVTNIVNRQPEIS 376
D +A +D+D ++ +++ ++ SN+ S P++ + + P NE + N PE S
Sbjct: 213 DKGEAVADEDFQRANDLQDEITALRSNILASVDPRLLEDTMPRNEEIHRPKNLFPENS 270
>Z11505-2|CAA77585.1| 418|Caenorhabditis elegans Hypothetical
protein F59B2.3 protein.
Length = 418
Score = 32.3 bits (70), Expect = 0.39
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +2
Query: 101 QRSVYFEE-IMSRRRLRDEDI---EGFWDIPSGSEDGQDFSDAESDDDIEKVQSIRNFLS 268
+R+V+FEE M+ ++ E + GF D+ G DFS SDD E + +
Sbjct: 49 ERTVFFEEKTMADVQIDCEGLILSPGFIDLQLNGGFGIDFSTYNSDDK-EYQEGLALVAK 107
Query: 269 EPLSNVETSFSPQIYQYSSPVNEH 340
+ L++ TSFSP + SSP H
Sbjct: 108 QLLAHGVTSFSPTVIT-SSPETYH 130
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 31.1 bits (67), Expect = 0.90
Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Frame = +2
Query: 89 NSVLQRSVYFEEIMSRRRLRDEDIEGFWDIPSGSEDGQDFSDAESDDDIEKVQSIRNFLS 268
N L R ++E++++ +R+ + +PS SEDG+ ++++ + + + S
Sbjct: 260 NLRLLRPPWYEDLINPQRVSNSVPTSSMSLPSTSEDGRQNTNSQDNVTLLMALQQQQRRS 319
Query: 269 EPLSNV------ETSFSP-QIYQYSSPVNEHVTNIVNRQPEISNPQPST 394
+ L +V T S QI ++SP + ++ QP SN + S+
Sbjct: 320 QQLQHVINITPIPTPISTGQIVTHASPAGTVIVPVLPLQPGTSNQESSS 368
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 31.1 bits (67), Expect = 0.90
Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Frame = +2
Query: 89 NSVLQRSVYFEEIMSRRRLRDEDIEGFWDIPSGSEDGQDFSDAESDDDIEKVQSIRNFLS 268
N L R ++E++++ +R+ + +PS SEDG+ ++++ + + + S
Sbjct: 260 NLRLLRPPWYEDLINPQRVSNSVPTSSMSLPSTSEDGRQNTNSQDNVTLLMALQQQQRRS 319
Query: 269 EPLSNV------ETSFSP-QIYQYSSPVNEHVTNIVNRQPEISNPQPST 394
+ L +V T S QI ++SP + ++ QP SN + S+
Sbjct: 320 QQLQHVINITPIPTPISTGQIVTHASPAGTVIVPVLPLQPGTSNQESSS 368
>Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 113 YFEEIMSRRRLRDEDIEGFWDIPSGSEDGQDFSDAESDDD 232
Y E+ +++ D+D E + D SED +DF + E D+D
Sbjct: 60 YGEKKPKKQKGSDDDDEDYVDETMPSEDEEDFDNNEEDED 99
>AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 113 YFEEIMSRRRLRDEDIEGFWDIPSGSEDGQDFSDAESDDD 232
Y E+ +++ D+D E + D SED +DF + E D+D
Sbjct: 60 YGEKKPKKQKGSDDDDEDYVDETMPSEDEEDFDNNEEDED 99
>AC006834-8|AAF40006.1| 865|Caenorhabditis elegans Hypothetical
protein ZK973.2 protein.
Length = 865
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +2
Query: 209 SDAESDDDIEKVQSIR-NFLSEPLSNVETSFSPQIY----QYSSPVNEHVTNIVNRQPEI 373
S +E DD++EK++ + + EPL ++E F+ Y P + IV R+ +
Sbjct: 367 SSSEEDDEVEKIRDPKVRYADEPLIDIEKKFAEMGYTIKLSKEHPKAGMLKEIVERRETV 426
Query: 374 SNP 382
+P
Sbjct: 427 RDP 429
>AL031254-1|CAA20282.1| 395|Caenorhabditis elegans Hypothetical
protein 4R79.2 protein.
Length = 395
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = +2
Query: 173 DIPSGSEDGQDFSDAESDDDIEKVQSIRNFLSEPLSNVETSFSPQIYQYS--SPVNEHV- 343
+IP + Q ++ +D++ +++ +++L +PL+ + +I Y NE V
Sbjct: 91 EIPCILDKSQYLEESSLEDEMREIEQNKSYLDDPLTKILKKELEEIKNYEDFQVRNEQVL 150
Query: 344 TNIVNRQPEISNPQPSTS 397
NI+ ++P QP S
Sbjct: 151 DNIIIKKPLYRPIQPEQS 168
>Z99169-2|CAB16307.1| 1334|Caenorhabditis elegans Hypothetical
protein C26H9A.2 protein.
Length = 1334
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 204 IFLMLKVMMTSKRFSPSETFYQSHSATW-KLPSLRKYISIRLPST 335
+ ++ KV S RF PS Y S TW + SL + SI ST
Sbjct: 696 VHIIFKVFTLSMRFEPSNAKYFSTEITWDSITSLLRLTSIFNEST 740
>Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical
protein C08H9.2 protein.
Length = 1220
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +2
Query: 131 SRRRLRDEDIEGFWDIP-SGSEDGQDFSDAESDDDIEKVQSIRNFLSEPLSNV 286
S R+LRDE E D+P SGS+DG+ + ++EK + N + E L+NV
Sbjct: 586 SIRKLRDET-ETRIDLPESGSDDGK-ITVTGKQANVEKAVAQLNKIQEELANV 636
>Z82073-4|CAB04927.2| 208|Caenorhabditis elegans Hypothetical
protein W06D12.6 protein.
Length = 208
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = +2
Query: 311 YQYSSPVNEHVTNIVNRQPEISNPQPSTSGMTSRYNTRFNYKYHCTISGT*TIIDYE 481
YQ+ SP N+H T ++R+ N + G + Y C G + +E
Sbjct: 101 YQFHSPTNQHFTRAIDREDVYIN-RTIEGGTRKNIVESCEFTYTCAGDGDLVVFSWE 156
>Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical
protein C34F6.9 protein.
Length = 1181
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 182 SGSEDGQDFSDAESDDDIEK-VQSIRN 259
S SED DFS+ + D DIE+ VQ+I N
Sbjct: 673 SMSEDNDDFSEHDEDFDIEQAVQAIDN 699
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 28.3 bits (60), Expect = 6.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 230 HHHFQHQKNLDHLHSQKEYPR 168
HHH QHQ+ L Q+++P+
Sbjct: 346 HHHQQHQQQLSQQQQQQQHPQ 366
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 28.3 bits (60), Expect = 6.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 230 HHHFQHQKNLDHLHSQKEYPR 168
HHH QHQ+ L Q+++P+
Sbjct: 346 HHHQQHQQQLSQQQQQQQHPQ 366
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 28.3 bits (60), Expect = 6.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 230 HHHFQHQKNLDHLHSQKEYPR 168
HHH QHQ+ L Q+++P+
Sbjct: 346 HHHQQHQQQLSQQQQQQQHPQ 366
>AF039053-3|AAC25880.2| 349|Caenorhabditis elegans Hypothetical
protein C45H4.13 protein.
Length = 349
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = +2
Query: 113 YFEEIMSRRRLRDEDIEGFWDIPSGSEDGQDFSDAESDDDIEKVQSIRNFLSEPLSNVET 292
+F +++R D G + SGS +S ++S SI + ++ T
Sbjct: 215 FFRYFLTQRIRHARDSSGSHESYSGSSSSSSYSSSDSSSYSSYTPSISS------NSDYT 268
Query: 293 SFSPQIYQYSS 325
S+SP Y YSS
Sbjct: 269 SYSPSYYSYSS 279
>Z81581-6|CAB04666.1| 679|Caenorhabditis elegans Hypothetical
protein T02E1.3b protein.
Length = 679
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -3
Query: 227 HHFQHQKNLDHLH-SQKEYPRNLQYLHHA 144
H HQ + H H SQ + ++ QYLHHA
Sbjct: 421 HRPPHQHPIHHHHQSQHQLHQHQQYLHHA 449
>Z81581-5|CAB04667.2| 646|Caenorhabditis elegans Hypothetical
protein T02E1.3a protein.
Length = 646
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -3
Query: 227 HHFQHQKNLDHLH-SQKEYPRNLQYLHHA 144
H HQ + H H SQ + ++ QYLHHA
Sbjct: 388 HRPPHQHPIHHHHQSQHQLHQHQQYLHHA 416
>Z81051-8|CAB02869.1| 425|Caenorhabditis elegans Hypothetical
protein C55A6.9 protein.
Length = 425
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +2
Query: 122 EIMSRRRLRDEDIEGFWDIPSGSEDGQDFSDAESDDDIEKVQSIRNFLSEPLSNVETS 295
E+ + + R ++I I E+G D SD SD D +K Q R+ S +S+ + S
Sbjct: 357 ELYEQPKTRKQEI--LEKIQEKKEEGGDSSDQSSDSDDDKPQKSRSDSSSDVSSDDDS 412
>Z69716-2|CAA93527.1| 474|Caenorhabditis elegans Hypothetical
protein C04B4.2 protein.
Length = 474
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 52 NIFEFKQTTNVPLSFK 5
N+FEF QT NVPLS +
Sbjct: 233 NVFEFYQTDNVPLSVR 248
>Z68115-2|CAA92167.1| 914|Caenorhabditis elegans Hypothetical
protein F19H6.3 protein.
Length = 914
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = +2
Query: 146 RDEDIEGFWDIPSGSEDGQDFSDAESDDDIEKVQSIRNFLSEPLSNVETSFSPQIYQYSS 325
R D+E + SGS + ++ D E+ D K I+ L V+ +Y+
Sbjct: 252 RKNDLEEKVEEVSGSPNTINYMDEEAHDGFVKTDKIKTALIAKNLEVKDEKVKTSNKYNH 311
Query: 326 PVNEHVTNIVNRQPEIS 376
PV+ T +R PE++
Sbjct: 312 PVSTFATE-SSRNPELA 327
>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical
protein T13H2.5a protein.
Length = 2471
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 134 RRRLRDEDIEGFWDIPSGSEDGQDFSDAESDDD 232
+++ E IEG DIP+ SED SD E DD+
Sbjct: 454 KKKFAPELIEG--DIPTPSEDSLTSSDEERDDN 484
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,346,271
Number of Sequences: 27780
Number of extensions: 381380
Number of successful extensions: 1347
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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