Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_J02
(769 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 25 1.0
AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein. 25 1.0
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 23 2.4
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 3.1
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 22 5.5
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 22 5.5
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 22 5.5
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 5.5
AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein. 22 5.5
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 22 7.2
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 22 7.2
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 22 7.2
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 22 7.2
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 21 9.5
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 24.6 bits (51), Expect = 1.0
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +1
Query: 487 QSVMDLESLAL*LTQRKKKDLFGRKHIFNNALLHLLETQISIHRL*TLKLPFFIFYGFXV 666
QS+ D +S + + KK G KH+ N L I +H+ + + + GF +
Sbjct: 316 QSIWDYDSTYIPKVKNKKA---GSKHLLQNTWLDPEYPMIRVHKTQSQTIDIYSRIGFPI 372
Query: 667 M 669
+
Sbjct: 373 L 373
>AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein.
Length = 615
Score = 24.6 bits (51), Expect = 1.0
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -1
Query: 343 NMLVDGRRILIYLRRE 296
N+L++GRR +I+ RRE
Sbjct: 301 NVLINGRRRIIFARRE 316
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 23.4 bits (48), Expect = 2.4
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -3
Query: 230 HHHFQHQKNLDHLH 189
HHH ++L HLH
Sbjct: 352 HHHHHQTQSLQHLH 365
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.0 bits (47), Expect = 3.1
Identities = 11/31 (35%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Frame = -3
Query: 230 HHHFQHQKNLDHLHS----QKEYPRNLQYLH 150
HHH H H HS YP +Q H
Sbjct: 431 HHHHSHAATPHHQHSTPLAHSSYPAAIQIGH 461
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 22.2 bits (45), Expect = 5.5
Identities = 11/35 (31%), Positives = 14/35 (40%)
Frame = +2
Query: 593 WKRKFPFTDYRL*NSPSLFFMVFX*CVISAYWRRY 697
W KFP R+ +FF + AYW Y
Sbjct: 404 WLSKFPTRSKRIDVISRIFFPIVFAFFNLAYWSTY 438
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 22.2 bits (45), Expect = 5.5
Identities = 11/35 (31%), Positives = 14/35 (40%)
Frame = +2
Query: 593 WKRKFPFTDYRL*NSPSLFFMVFX*CVISAYWRRY 697
W KFP R+ +FF + AYW Y
Sbjct: 404 WLSKFPTRSKRIDVISRIFFPIVFAFFNLAYWSTY 438
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 22.2 bits (45), Expect = 5.5
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +2
Query: 191 EDGQDFSDAESDDDIE 238
ED D D + DDD+E
Sbjct: 391 EDDDDDGDDDDDDDVE 406
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 22.2 bits (45), Expect = 5.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 468 SSTMSNTIGHGSRIPGTVTHSKKKKRFI 551
SS + +GS GTV+ K+K+R +
Sbjct: 1068 SSGSDSGSSNGSWTAGTVSQQKQKRRMV 1095
>AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein.
Length = 493
Score = 22.2 bits (45), Expect = 5.5
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = -3
Query: 755 PQVPFSLKNF 726
PQVP+++KNF
Sbjct: 143 PQVPYTVKNF 152
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.8 bits (44), Expect = 7.2
Identities = 9/42 (21%), Positives = 20/42 (47%)
Frame = +3
Query: 447 QSQEPRRSSTMSNTIGHGSRIPGTVTHSKKKKRFIWKKTYFQ 572
+S+EP+ S++SN H + ++ K+ + Y +
Sbjct: 75 RSREPKIISSLSNNTIHNNNYKYNYNNNNYNKKLYYNINYIE 116
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.8 bits (44), Expect = 7.2
Identities = 9/42 (21%), Positives = 20/42 (47%)
Frame = +3
Query: 447 QSQEPRRSSTMSNTIGHGSRIPGTVTHSKKKKRFIWKKTYFQ 572
+S+EP+ S++SN H + ++ K+ + Y +
Sbjct: 75 RSREPKIISSLSNNTIHNNNYKYNYNNNNYNKKLYYNINYIE 116
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.8 bits (44), Expect = 7.2
Identities = 9/42 (21%), Positives = 20/42 (47%)
Frame = +3
Query: 447 QSQEPRRSSTMSNTIGHGSRIPGTVTHSKKKKRFIWKKTYFQ 572
+S+EP+ S++SN H + ++ K+ + Y +
Sbjct: 75 RSREPKIISSLSNNTIHNNNYKYNYNNNNYNKKLYYNINYIE 116
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.8 bits (44), Expect = 7.2
Identities = 9/42 (21%), Positives = 20/42 (47%)
Frame = +3
Query: 447 QSQEPRRSSTMSNTIGHGSRIPGTVTHSKKKKRFIWKKTYFQ 572
+S+EP+ S++SN H + ++ K+ + Y +
Sbjct: 75 RSREPKIISSLSNNTIHNNNYKYNYNNNNYNKKLYYNINYIE 116
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 21.4 bits (43), Expect = 9.5
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -3
Query: 242 PFRCHHHFQHQKNLDHLHSQKEYPR 168
PF C+ +++ S +EYPR
Sbjct: 681 PFNCNCSMDWLPGINNQTSTREYPR 705
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,478
Number of Sequences: 438
Number of extensions: 4748
Number of successful extensions: 18
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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