Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_I23
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    25   5.6  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   5.6  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   7.4  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    24   7.4  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    24   7.4  

>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 328 YIACVVCSXIQILCNIGLFN 387
           Y A +VC+ I + C+  LFN
Sbjct: 46  YKAWIVCTTISLCCDFPLFN 65


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 82  YINGCGFEKIAWTANSTGMERDPCKFLPQ 168
           ++  CG+ ++AW+     ME   C F P+
Sbjct: 340 FLKNCGYYELAWSIFQANMEL--CYFYPR 366


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 295 FTLGSSGLITT*VPLYLLLSPSFFT 221
           F LG   L+ T  P+Y+LLS  + T
Sbjct: 70  FNLGYGWLLLTKYPVYVLLSTYYLT 94


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +1

Query: 361 ILCNIGLFNEKK 396
           ILCN+G+ NEKK
Sbjct: 193 ILCNLGVNNEKK 204


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 54  RTSQYFQLSTYYRFI 10
           RT QYF L+ +Y+F+
Sbjct: 151 RTGQYFNLARWYKFM 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,588,165
Number of Sequences: 5004
Number of extensions: 28938
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)